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SCNpilot_cont_500_bf_scaffold_9044

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_9044_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..224
DNA (222bp) protein (74aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
atpD; ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta n=17 Tax=Rhizobiaceae RepID=V5ENA6_9RHIZ
SCNpilot_cont_500_bf_scaffold_9044_2
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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307..714
DNA (408bp) protein (136aa)
atpC; F0F1 ATP synthase subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
ATP synthase epsilon chain n=1 Tax=Rhizobium sp. CF080 RepID=J3BEF3_9RHIZ
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_cont_500_bf_scaffold_9044_3
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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867..1343
DNA (477bp) protein (159aa)
Chemotaxis signal transduction protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BL26_9RHIZ
Chemotaxis signal transduction protein {ECO:0000313|EMBL:EJL52914.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
cheW5; chemotaxis signal transduction protein; K03408 purine-binding chemotaxis protein CheW
SCNpilot_cont_500_bf_scaffold_9044_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1422..3110)
DNA (1689bp) protein (563aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
aroB; 3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AHX8_RHIET
SCNpilot_cont_500_bf_scaffold_9044_5
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3145..3327
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0WCD3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ21129.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_9044_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3324..4271
DNA (948bp) protein (316aa)
Tyrosine recombinase XerD n=1 Tax=Rhizobium sp. AP16 RepID=J2LJ59_9RHIZ
xerD; site-specific tyrosine recombinase XerD; K04763 integrase/recombinase XerD
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_cont_500_bf_scaffold_9044_7
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4334..5245
DNA (912bp) protein (304aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" s
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HA26_9RHIZ
accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
SCNpilot_cont_500_bf_scaffold_9044_8
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5427..5972
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PZC8_9RHIZ
conserved exported protein of unknown function
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:KGE81024.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_cont_500_bf_scaffold_9044_9
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5953..6573
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037E66C0
Uncharacterized protein {ECO:0000313|EMBL:EJL57594.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
L,D-transpeptidase domain-containing protein
SCNpilot_cont_500_bf_scaffold_9044_10
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6578..6811
DNA (234bp) protein (78aa)
hypothetical protein; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
SirA-like domain-containing protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F591_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF61430.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_cont_500_bf_scaffold_9044_11
unknown

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7468..7674
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_9044_12
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7723..8883)
DNA (1161bp) protein (387aa)
amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32]
Amidohydrolase n=1 Tax=Rhizobium sp. CF142 RepID=J2L077_9RHIZ rbh
Amidohydrolase {ECO:0000313|EMBL:EJJ26877.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_cont_500_bf_scaffold_9044_13
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9047..10153
DNA (1107bp) protein (369aa)
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CCM77545.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CCM77545.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
dacF3; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4); K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q026_9RHIZ
SCNpilot_cont_500_bf_scaffold_9044_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10162..10641
DNA (480bp) protein (160aa)
Probable cobalamin synthesis protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PQ20_RHIE6
cobalamin synthesis protein
Probable cobalamin synthesis protein {ECO:0000313|EMBL:ACE93032.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Displaying 14 items

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