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SCNpilot_cont_500_bf_scaffold_9338

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_9338_1
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(328..564)
DNA (237bp) protein (79aa)
30S ribosomal protein S17 n=2 Tax=Agrobacterium RepID=RS17_AGRT5
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
SCNpilot_cont_500_bf_scaffold_9338_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(580..780)
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V1G8_9RHIZ
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_500_bf_scaffold_9338_3
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(792..1889)
DNA (1098bp) protein (366aa)
PREDICTED: 30S ribosomal protein S3, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1847D rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 rbh
SCNpilot_cont_500_bf_scaffold_9338_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1889..2278)
DNA (390bp) protein (130aa)
50S ribosomal protein L22 n=8 Tax=Rhizobium meliloti RepID=RL22_RHIME
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
SCNpilot_cont_500_bf_scaffold_9338_5
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2281..2559)
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Rhizobium sp. RepID=L0NEJ1_RHISP
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
SCNpilot_cont_500_bf_scaffold_9338_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2575..3411)
DNA (837bp) protein (279aa)
50S ribosomal protein L2 n=1 Tax=Rhizobium sp. (strain NGR234) RepID=RL2_RHISN rbh
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_cont_500_bf_scaffold_9338_7
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3423..3716)
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Rhizobium sp. CF122 RepID=J2JCL2_9RHIZ
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
SCNpilot_cont_500_bf_scaffold_9338_8
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3713..4333)
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=2 Tax=Agrobacterium RepID=F0L752_AGRSH rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 rbh
SCNpilot_cont_500_bf_scaffold_9338_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4346..4984)
DNA (639bp) protein (213aa)
50S ribosomal protein L3 n=1 Tax=Rhizobium sp. CF080 RepID=J3BZX8_9RHIZ rbh
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_cont_500_bf_scaffold_9338_10
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5142..5450)
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=18 Tax=Rhizobiaceae RepID=RS10_RHIME
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_500_bf_scaffold_9338_11
unknown

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comp(5693..5764)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 11 items

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