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SCNpilot_cont_500_bf_scaffold_13762

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_13762_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..293)
DNA (291bp) protein (97aa)
transketolase central region; K00615 transketolase [EC:2.2.1.1]
Transketolase central region n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UX50_9RHIZ
Transketolase {ECO:0000313|EMBL:KDP74194.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_cont_500_bf_scaffold_13762_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(296..1234)
DNA (939bp) protein (313aa)
transketolase domain-containing protein; K00615 transketolase [EC:2.2.1.1] rbh
Transketolase domain protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X8F0_OCHA4 rbh
Transketolase {ECO:0000313|EMBL:KDP74193.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_cont_500_bf_scaffold_13762_3
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1240..2262)
DNA (1023bp) protein (341aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
mtnA; methylthioribose-1-phosphate isomerase; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
methylthioribose-1-phosphate isomerase n=1 Tax=Ochrobactrum anthropi RepID=UPI000287AE11 rbh
SCNpilot_cont_500_bf_scaffold_13762_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2259..3530)
DNA (1272bp) protein (424aa)
Methylthioribose kinase {ECO:0000256|HAMAP-Rule:MF_01683}; Short=MTR kinase {ECO:0000256|HAMAP-Rule:MF_01683};; EC=2.7.1.100 {ECO:0000256|HAMAP-Rule:MF_01683};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mtnK; methylthioribose kinase (EC:2.7.1.100); K00899 5-methylthioribose kinase [EC:2.7.1.100] rbh
Methylthioribose kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWI5_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_13762_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3700..4065
DNA (366bp) protein (122aa)
ABC transporter n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UUH0_9RHIZ
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KDP74190.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
monosaccharide-transporting ATPase
SCNpilot_cont_500_bf_scaffold_13762_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4023..5141
DNA (1119bp) protein (373aa)
Ribose import ATP-binding protein RbsA 2 {ECO:0000313|EMBL:EYR81686.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR81686.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter-like protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
Ribose import ATP-binding protein RbsA 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFD7_9RHIZ
SCNpilot_cont_500_bf_scaffold_13762_7
unknown

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comp(5263..5415)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_13762_8
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5646..6113
DNA (468bp) protein (156aa)
ABC transporter n=1 Tax=Ochrobactrum anthropi RepID=UPI000288B25C
Sugar ABC transporter permease {ECO:0000313|EMBL:EXL03133.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
monosaccharide-transporting ATPase; K02057 simple sugar transport system permease protein
SCNpilot_cont_500_bf_scaffold_13762_9
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6169..7212
DNA (1044bp) protein (348aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Ochrobactrum anthropi RepID=UPI0002899CEC rbh
Ribose ABC transporter, periplasmic ribose-binding protein {ECO:0000313|EMBL:AHK46268.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
putative sugar uptake ABC transporter periplasmic solute-binding protein; K02058 simple sugar transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_13762_10
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7732..9786)
DNA (2055bp) protein (685aa)
short-chain dehydrogenase n=1 Tax=Ochrobactrum anthropi RepID=UPI0002883430 rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:EXL03135.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
short chain dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_13762_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9848..10801)
DNA (954bp) protein (318aa)
Transcriptional regulator, DeoR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWP9_9RHIZ rbh
Putative transcriptional regulator protein, LacI family {ECO:0000313|EMBL:AHK46267.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
DeoR family transcriptional regulator rbh
Displaying 11 items

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