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SCNpilot_cont_500_bf_scaffold_11292

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_11292_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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210..860
DNA (651bp) protein (217aa)
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZY7_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:EYR81550.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_11292_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1090..2343
DNA (1254bp) protein (418aa)
Sarcosine oxidase subunit beta {ECO:0000313|EMBL:EYR81549.1}; EC=1.5.3.1 {ECO:0000313|EMBL:EYR81549.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sarcosine oxidase subunit beta; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
Sarcosine oxidase subunit beta n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJW5_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_11292_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2353..2637
DNA (285bp) protein (95aa)
sarcosine oxidase subunit delta family protein; K00304 sarcosine oxidase, subunit delta [EC:1.5.3.1]
Sarcosine oxidase delta subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F030_9RHIZ
Sarcosine oxidase delta subunit {ECO:0000313|EMBL:EYR81548.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_11292_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2618..4084
DNA (1467bp) protein (489aa)
Sarcosine oxidase subunit alpha {ECO:0000313|EMBL:EYR81547.1}; EC=1.5.3.1 {ECO:0000313|EMBL:EYR81547.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sarcosine oxidase subunit alpha family protein; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Sarcosine oxidase subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4C7_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_11292_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4084..5364
DNA (1281bp) protein (427aa)
Sarcosine oxidase subunit alpha {ECO:0000313|EMBL:EYR81547.1}; EC=1.5.3.1 {ECO:0000313|EMBL:EYR81547.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sarcosine oxidase subunit alpha family protein; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Sarcosine oxidase subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4C7_9RHIZ
SCNpilot_cont_500_bf_scaffold_11292_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5357..5902
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8P8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81546.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_11292_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5964..7028
DNA (1065bp) protein (355aa)
Leu/Ile/Val-binding protein 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZZ2_9RHIZ rbh
ABC-type branched-chain amino acid transport system periplasmic component {ECO:0000313|EMBL:EYR81545.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_11292_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7113..7556)
DNA (444bp) protein (148aa)
L-threonine dehydratase catabolic TdcB {ECO:0000313|EMBL:EYR77399.1}; EC=4.3.1.19 {ECO:0000313|EMBL:EYR77399.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19]
L-threonine dehydratase catabolic TdcB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX21_9RHIZ
SCNpilot_cont_500_bf_scaffold_11292_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7532..8071)
DNA (540bp) protein (180aa)
L-threonine dehydratase catabolic TdcB {ECO:0000313|EMBL:EYR77399.1}; EC=4.3.1.19 {ECO:0000313|EMBL:EYR77399.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19]
L-threonine dehydratase catabolic TdcB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX21_9RHIZ
SCNpilot_cont_500_bf_scaffold_11292_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8179..8412)
DNA (234bp) protein (78aa)
methionine ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003720AED
Dioxygenase {ECO:0000313|EMBL:KDP76701.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
metQ; probabable D-methionine-binding lipoprotein metQ; K02073 D-methionine transport system substrate-binding protein
Displaying 10 items

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