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SCNpilot_cont_500_bf_scaffold_8071

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_8071_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..652)
DNA (651bp) protein (217aa)
cysD; sulfate adenylyltransferase; K00957 sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
Sulfate adenylyltransferase subunit 2; EC=2.7.7.4;; ATP-sulfurylase small subunit; Sulfate adenylate transferase; Short=SAT;; TaxID=398 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici.;"
Sulfate adenylyltransferase subunit 2 n=1 Tax=Rhizobium tropici RepID=CYSD_RHITR
SCNpilot_cont_500_bf_scaffold_8071_2
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(771..1511)
DNA (741bp) protein (247aa)
Phosphoadenosine phosphosulfate reductase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VP04_9RHIZ
Phosphoadenosine phosphosulfate reductase {ECO:0000313|EMBL:EJZ20576.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
phosphoadenosine phosphosulfate reductase
SCNpilot_cont_500_bf_scaffold_8071_3
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1686..3032)
DNA (1347bp) protein (449aa)
chloride channel protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036DB886
Chloride channel core {ECO:0000313|EMBL:EPE99566.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
Chloride channel core
SCNpilot_cont_500_bf_scaffold_8071_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3112..4764)
DNA (1653bp) protein (551aa)
Oxygen-dependent choline dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054588}; Short=CDH {ECO:0000256|HAMAP-Rule:MF_00750};; Short=CHD {ECO:0000256|HAMAP-Rule:MF_00750};; EC=1.1.99.1 {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054587};; Betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
betA; choline dehydrogenase; K00108 choline dehydrogenase [EC:1.1.99.1] rbh
choline dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000361FA07 rbh
SCNpilot_cont_500_bf_scaffold_8071_5
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4779..6170)
DNA (1392bp) protein (464aa)
NAD/NADP-dependent betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00804}; Short=BADH {ECO:0000256|HAMAP-Rule:MF_00804};; EC=1.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00804, ECO:0000256|SAAS:SAAS00007649};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
betB; betaine aldehyde dehydrogenase; K00130 betaine-aldehyde dehydrogenase [EC:1.2.1.8]
NAD/NADP-dependent betaine aldehyde dehydrogenase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=BETB_AGRRK
SCNpilot_cont_500_bf_scaffold_8071_6
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6172..7701)
DNA (1530bp) protein (510aa)
Choline sulfatase {ECO:0000313|EMBL:CCE95139.1}; EC=3.1.6.6 {ECO:0000313|EMBL:CCE95139.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Choline sulfatase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A249_RHIFH rbh
betC; choline sulfatase rbh
SCNpilot_cont_500_bf_scaffold_8071_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7757..8341)
DNA (585bp) protein (195aa)
HTH-type transcriptional regulator BetI n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N725_RHILT
BetI family transcriptional regulator; K02167 TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
HTH-type transcriptional regulator BetI {ECO:0000256|HAMAP-Rule:MF_00768}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_cont_500_bf_scaffold_8071_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8489..9286
DNA (798bp) protein (266aa)
Putative transmembrane protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MJU1_RHIL3
transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:CAK06769.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_cont_500_bf_scaffold_8071_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9228..10682
DNA (1455bp) protein (485aa)
diguanylate cyclase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036EA259
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJC70070.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
GGDEF/EAL sensory box protein
SCNpilot_cont_500_bf_scaffold_8071_10
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10669..10890
DNA (222bp) protein (74aa)
diguanylate cyclase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035E8EDF
Diguanylate cyclase/phosphodiesterase with CBS domain containing protein {ECO:0000313|EMBL:EUB95415.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
sensory box/GGDEF family protein
SCNpilot_cont_500_bf_scaffold_8071_11
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10972..11991
DNA (1020bp) protein (340aa)
Quinone oxidoreductase n=1 Tax=Rhizobium sp. RepID=L0NCE8_RHISP rbh
NAD(P)H-quinone oxidoreductase {ECO:0000313|EMBL:KGD85940.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
putative quinone oxidoreductase
SCNpilot_cont_500_bf_scaffold_8071_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12091..12750)
DNA (660bp) protein (220aa)
gst2; glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain protein n=2 Tax=Rhizobium meliloti RepID=F6E2Y1_SINMK
Glutathione-S-transferase {ECO:0000313|EMBL:AHK43711.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_cont_500_bf_scaffold_8071_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12866..13321)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES84_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79159.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_8071_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13318..14184)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES84_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79159.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_8071_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14451..16754
DNA (2304bp) protein (768aa)
histidine kinase n=1 Tax=Rhizobium leguminosarum RepID=UPI000375E160 rbh
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJC73763.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase rbh
SCNpilot_cont_500_bf_scaffold_8071_16
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16951..17961
DNA (1011bp) protein (337aa)
Putative exonuclease, DNA ligase-associated n=1 Tax=Rhizobium sp. CF080 RepID=J3BSY6_9RHIZ rbh
Putative exonuclease, DNA ligase-associated {ECO:0000313|EMBL:EUB95393.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
mRNA processing exonuclease; K07577 putative mRNA 3-end processing factor
SCNpilot_cont_500_bf_scaffold_8071_17
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17966..18841
DNA (876bp) protein (292aa)
Putative DNA ligase Lig n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQX6_9RHIZ
ATP-dependent DNA ligase {ECO:0000313|EMBL:KJF65805.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
ATP-dependent DNA ligase
SCNpilot_cont_500_bf_scaffold_8071_18
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18804..19502
DNA (699bp) protein (233aa)
ATP-dependent DNA ligase protein {ECO:0000313|EMBL:AIC26382.1}; EC=6.5.1.1 {ECO:0000313|EMBL:AIC26382.1};; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1]
Probable DNA ligase (ATP) protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2KB17_RHIEC
SCNpilot_cont_500_bf_scaffold_8071_19
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19375..21387)
DNA (2013bp) protein (671aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JTB4_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35827.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_500_bf_scaffold_8071_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21529..22536)
DNA (1008bp) protein (336aa)
L-asparaginase II n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0K8N8_RHILT
L-asparaginase II {ECO:0000313|EMBL:EJC73774.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
L-asparaginase II
SCNpilot_cont_500_bf_scaffold_8071_21
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22716..23333)
DNA (618bp) protein (206aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VP11_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJZ20586.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_8071_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23449..24879
DNA (1431bp) protein (477aa)
major facilitator transporter n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036EC2D8
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACS55192.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_500_bf_scaffold_8071_23
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24888..26129)
DNA (1242bp) protein (414aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI0003793063
LysR family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:EJC70082.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
SCNpilot_cont_500_bf_scaffold_8071_24
unknown

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26235..26396
DNA (162bp) protein (54aa)

This feature has no annotations

Displaying 24 items

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