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SCNpilot_cont_500_bf_scaffold_8075

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_8075_1
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..258
DNA (258bp) protein (86aa)
ABC transporter n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002ECB63A
ATP-binding protein {ECO:0000313|EMBL:KGJ11307.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
ABC-type sugar transport systems, ATPase component
SCNpilot_cont_500_bf_scaffold_8075_2
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(260..1087)
DNA (828bp) protein (276aa)
Peptidase M20 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F9H3_9RHIZ
Peptidase M20 {ECO:0000313|EMBL:EHS50511.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
argE; hypothetical protein
SCNpilot_cont_500_bf_scaffold_8075_3
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1168..2736)
DNA (1569bp) protein (523aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
glucose-6-phosphate 1-dehydrogenase; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] rbh
glucose 6-phosphate dehydrogenase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036C0CE3 rbh
SCNpilot_cont_500_bf_scaffold_8075_4
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2817..3845)
DNA (1029bp) protein (343aa)
Thioesterase of type I polyketide synthase or non-ribosomal peptide synthase like protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DC59_9RHIZ rbh
Thioesterase of type I polyketide synthase or non-ribosomal peptide synthase like protein {ECO:0000313|EMBL:EJK87504.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
non-ribosomal peptide synthetase rbh
SCNpilot_cont_500_bf_scaffold_8075_5
unknown

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4090..4806
DNA (717bp) protein (239aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_8075_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4776..6329)
DNA (1554bp) protein (518aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Rhizobium sp. AP16 RepID=J2LIT6_9RHIZ rbh
AMP-dependent synthetase {ECO:0000313|EMBL:KEA03403.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
matB; long-chain-fatty-acid-CoA ligase rbh
SCNpilot_cont_500_bf_scaffold_8075_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6344..6619)
DNA (276bp) protein (92aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JNF9_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM29090.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_8075_8
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6631..8586)
DNA (1956bp) protein (652aa)
asnB; asparagine synthase (glutamine-hydrolyzing); K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] rbh
Asparagine synthetase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JNF8_AGRRK rbh
Asparagine synthase {ECO:0000313|EMBL:GAJ92327.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_cont_500_bf_scaffold_8075_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9036..9554
DNA (519bp) protein (173aa)
hemK; protoporphyrinogen oxidase (methyltransferase) protein; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Protoporphyrinogen oxidase (Methyltransferase) protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JNF7_AGRRK
Protein methyltransferase HemK {ECO:0000313|EMBL:GAJ92326.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_cont_500_bf_scaffold_8075_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9743..10525)
DNA (783bp) protein (261aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JNF6_AGRRK
transcriptional regulator protein
Transcriptional regulator protein {ECO:0000313|EMBL:ACM29087.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_8075_11
unknown

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10882..11022
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying 11 items

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