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SCNpilot_cont_500_bf_scaffold_8920

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_8920_1
unknown

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comp(3..68)
DNA (66bp) protein (22aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_8920_2
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(120..722)
DNA (603bp) protein (201aa)
Biotin transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JAM3_AGRRK
bioN; biotin transporter; K02008 cobalt/nickel transport system permease protein
Transporter {ECO:0000313|EMBL:KEA05484.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_cont_500_bf_scaffold_8920_3
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(719..1186)
DNA (468bp) protein (156aa)
ABC-type cobalt transport system, ATPase component n=1 Tax=Rhizobium sp. CF080 RepID=J2K5Y2_9RHIZ
ABC transporter related protein {ECO:0000313|EMBL:EUC01325.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
bioM; biotin transporter; K02006 cobalt/nickel transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_8920_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1258..2598
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U5S6_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:AHF82744.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
hypothetical protein; K09927 hypothetical protein
SCNpilot_cont_500_bf_scaffold_8920_5
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2608..3561)
DNA (954bp) protein (318aa)
Flagellin C n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3WZ62_RHIFR
flaC3; flagellin C
Flagellin C {ECO:0000313|EMBL:AFL48918.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_cont_500_bf_scaffold_8920_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3685..4782)
DNA (1098bp) protein (366aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Chorismate synthase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGG0_RHITR
aroC; chorismate synthase
SCNpilot_cont_500_bf_scaffold_8920_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4960..5193)
DNA (234bp) protein (78aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WAS8_RHILT
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJC82861.1}; Flags: Precursor;; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_cont_500_bf_scaffold_8920_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5204..8068)
DNA (2865bp) protein (955aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium sp. CF142 RepID=J2AZ89_9RHIZ rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJJ28885.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
SCNpilot_cont_500_bf_scaffold_8920_9
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8265..8564
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HKT6_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPE99432.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_cont_500_bf_scaffold_8920_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8581..9165)
DNA (585bp) protein (195aa)
gpmB; phosphoglycerate mutase (EC:5.4.2.1)
Phosphoglycerate mutase protein n=2 Tax=Rhizobium etli RepID=Q2KBN8_RHIEC
Phosphoglycerate mutase {ECO:0000313|EMBL:AJC78193.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
SCNpilot_cont_500_bf_scaffold_8920_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9242..10060)
DNA (819bp) protein (273aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fabI2; enoyl-(acyl carrier protein) reductase (EC:1.3.1.10); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9] rbh
Enoyl-[acyl-carrier-protein] reductase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F0G8_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_8920_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10190..11341)
DNA (1152bp) protein (384aa)
Molecular chaperone protein, DnaJ family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGG5_RHITR
molecular chaperone protein, DnaJ family
Molecular chaperone protein, DnaJ family {ECO:0000313|EMBL:AGB70312.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 12 items

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