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SCNpilot_cont_500_bf_scaffold_3313

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3313_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..293)
DNA (291bp) protein (97aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutamine synthetase, type I (EC:6.3.1.2)
Glutamine synthetase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIP9_9RHIZ
SCNpilot_cont_500_bf_scaffold_3313_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(360..698)
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Rhizobium giardinii RepID=UPI000367F490
glnB; nitrogen regulatory protein PII; K04751 nitrogen regulatory protein P-II 1
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EHH04309.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
SCNpilot_cont_500_bf_scaffold_3313_3
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1039..2523
DNA (1485bp) protein (495aa)
YjeF-like protein, hydroxyethylthiazole kinase-related protein n=1 Tax=Rhizobium sp. CF142 RepID=J1TI91_9RHIZ
YjeF-like protein, hydroxyethylthiazole kinase-related protein {ECO:0000313|EMBL:EJJ31666.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
YjeF family protein
SCNpilot_cont_500_bf_scaffold_3313_4
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2501..3139)
DNA (639bp) protein (213aa)
Sulfoxide reductase heme-binding subunit YedZ n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I0R1_9RHIZ
Sulfoxide reductase heme-binding subunit YedZ {ECO:0000256|HAMAP-Rule:MF_01207, ECO:0000256|SAAS:SAAS00016679}; Flavocytochrome YedZ {ECO:0000256|HAMAP-Rule:MF_01207}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
sulfite oxidase subunit YedZ
SCNpilot_cont_500_bf_scaffold_3313_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3139..3891)
DNA (753bp) protein (251aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016472}; EC=1.8.-.- {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016459};; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
Sulfoxide reductase catalytic subunit YedY n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0K115_RHILV
putative sulfite oxidase subunit YedY; K07147
SCNpilot_cont_500_bf_scaffold_3313_6
unknown

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comp(3888..4013)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3313_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4358..6193
DNA (1836bp) protein (612aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] rbh
Dihydroxy-acid dehydratase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7D7_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_3313_8
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6373..6564)
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000365D148
Uncharacterized protein {ECO:0000313|EMBL:AJD40955.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3313_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6973..8376
DNA (1404bp) protein (468aa)
degQ; protease DegQ precursor (EC:3.4.21.-); K01362 [EC:3.4.21.-]
Periplasmic serine protease, Do/DeqQ family n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0VCX1_RHILV
Periplasmic serine protease, Do/DeqQ family {ECO:0000313|EMBL:EJC70638.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
SCNpilot_cont_500_bf_scaffold_3313_10
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8373..9662
DNA (1290bp) protein (430aa)
AAA ATPase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IAM8_AZOC5
recombination factor protein RarA; K07478 putative ATPase
AAA ATPase {ECO:0000313|EMBL:BAF88525.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_3313_11
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9696..10493)
DNA (798bp) protein (266aa)
phytanoyl-CoA dioxygenase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037414EA rbh
Phytanoyl-CoA dioxygenase family protein {ECO:0000313|EMBL:EEA95179.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
phytanoyl-CoA dioxygenase family protein rbh
SCNpilot_cont_500_bf_scaffold_3313_12
Leisingera sp. ANG-M1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10580..11467
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037D8B35 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KIC12555.1}; TaxID=1577895 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-M1.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_3313_13
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11531..14575)
DNA (3045bp) protein (1015aa)
nrd; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
ribonucleotide-diphosphate reductase subunit alpha n=1 Tax=Rhizobium giardinii RepID=UPI00037D2E44
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent {ECO:0000313|EMBL:EJL54901.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
Displaying 13 items

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