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SCNpilot_cont_500_bf_scaffold_3355

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3355_1
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..908
DNA (906bp) protein (302aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00037154AB
Inner-membrane translocator {ECO:0000313|EMBL:EKF18170.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_3355_2
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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913..1905
DNA (993bp) protein (331aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI0003708537
Inner-membrane translocator {ECO:0000313|EMBL:EKF18169.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_3355_3
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1902..2657
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036F76C7
ABC transporter {ECO:0000313|EMBL:EKF18168.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_3355_4
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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2651..3352
DNA (702bp) protein (234aa)
ABC transporter ATP-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003698834
amino acid ABC transporter ATPase; K01996 branched-chain amino acid transport system ATP-binding protein rbh
ABC-type amino acid transport system, ATPase component protein {ECO:0000313|EMBL:ADZ70296.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_3355_5
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3339..4166
DNA (828bp) protein (276aa)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
L-aspartate dehydrogenase; K06989 aspartate dehydrogenase [EC:1.4.1.21]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E5E56 rbh
SCNpilot_cont_500_bf_scaffold_3355_6
unknown

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4293..4469
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3355_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4607..5707
DNA (1101bp) protein (367aa)
Carboxynorspermidine/carboxyspermidine decarboxylase {ECO:0000256|PIRNR:PIRNR038941}; Short=CANS DC/CAS DC {ECO:0000256|PIRNR:PIRNR038941};; Short=CANSDC/CASDC {ECO:0000256|PIRNR:PIRNR038941};; EC=4.1.1.96 {ECO:0000256|PIRNR:PIRNR038941};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nspC; carboxynorspermidine decarboxylase; K13747 carboxynorspermidine decarboxylase [EC:4.1.1.-] rbh
Carboxynorspermidine/carboxyspermidine decarboxylase n=1 Tax=Rhizobium sp. RepID=L0NI20_RHISP rbh
SCNpilot_cont_500_bf_scaffold_3355_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5741..6979
DNA (1239bp) protein (413aa)
Saccharopine dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS54_9RHIZ rbh
Saccharopine dehydrogenase {ECO:0000313|EMBL:EYR81633.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_3355_9
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7037..8239)
DNA (1203bp) protein (401aa)
Flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family n=1 Tax=Rhizobium sp. CF080 RepID=J2SP88_9RHIZ
NAD(FAD)-utilizing dehydrogenase {ECO:0000313|EMBL:KEQ04384.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
hypothetical protein; K07007
SCNpilot_cont_500_bf_scaffold_3355_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8345..8539)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WCY4_RHILT
Uncharacterized protein {ECO:0000313|EMBL:AHF88447.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3355_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8605..8838)
DNA (234bp) protein (78aa)
30S ribosomal protein S21 n=2 Tax=Rhizobium etli RepID=Q2K1Q4_RHIEC
rpsU-3; 30S ribosomal protein S21 3
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_cont_500_bf_scaffold_3355_12
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9236..9994)
DNA (759bp) protein (253aa)
Glutaredoxin-like protein n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2H9R2_9RHOB
Glutaredoxin-like protein {ECO:0000313|EMBL:AKI03506.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
glutaredoxin
SCNpilot_cont_500_bf_scaffold_3355_13
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10132..11139)
DNA (1008bp) protein (336aa)
Plasmid partitioning protein RepB n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IRA2_METNO
plasmid partitioning protein RepB
Plasmid partitioning protein RepB {ECO:0000313|EMBL:ACL58642.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_500_bf_scaffold_3355_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11136..12257)
DNA (1122bp) protein (374aa)
chromosome partitioning protein ParA n=1 Tax=Rhizobium leguminosarum RepID=UPI000366CB6A
plasmid partitioning protein RepA
Plasmid partitioning protein RepA {ECO:0000313|EMBL:ACS60297.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_500_bf_scaffold_3355_15
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12447..13097
DNA (651bp) protein (217aa)
fucA1; L-fuculose phosphate aldolase (EC:4.1.2.17) rbh
Putative L-fuculose phosphate aldolase {ECO:0000313|EMBL:CAC46812.1}; EC=4.1.2.17 {ECO:0000313|EMBL:CAC46812.1};; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
fructose-bisphosphate aldolase n=1 Tax=Rhizobium meliloti RepID=UPI000361EB48 rbh
Displaying 15 items

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