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SCNpilot_cont_500_bf_scaffold_3723

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3723_1
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..808
DNA (807bp) protein (269aa)
DNA mismatch repair protein MutS n=1 Tax=Rhizobium sp. RepID=L0N9Z1_RHISP
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
SCNpilot_cont_500_bf_scaffold_3723_2
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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909..3821
DNA (2913bp) protein (971aa)
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IN12_9RHIZ
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
glnD; protein-P-II uridylyltransferase
SCNpilot_cont_500_bf_scaffold_3723_3
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3650..4459)
DNA (810bp) protein (270aa)
Uncharacterised protein {ECO:0000313|EMBL:CRD90273.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_cont_500_bf_scaffold_3723_4
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4518..5321
DNA (804bp) protein (268aa)
Multidrug transporter MurJ n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YSE8_9RHIZ
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
integral membrane protein MviN; K03980 virulence factor
SCNpilot_cont_500_bf_scaffold_3723_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5383..6555
DNA (1173bp) protein (391aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
trpS; Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) (EC:6.1.1.2) rbh
Tryptophan--tRNA ligase n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D0L9_RHILU rbh
SCNpilot_cont_500_bf_scaffold_3723_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6641..7132
DNA (492bp) protein (164aa)
Putative universal stress protein n=2 Tax=Rhizobium etli RepID=B3PZC2_RHIE6
universal stress protein
Universal stress UspA-like protein {ECO:0000313|EMBL:AGS20252.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_cont_500_bf_scaffold_3723_7
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7290..7853
DNA (564bp) protein (188aa)
Scaffold protein Nfu/NifU n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F721_9RHIZ rbh
Scaffold protein Nfu/NifU {ECO:0000313|EMBL:EHS51452.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
putative Nfu/NifU scaffold protein rbh
SCNpilot_cont_500_bf_scaffold_3723_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7879..8538
DNA (660bp) protein (220aa)
O-sialoglycoprotein endopeptidase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00037957AF
O-sialoglycoprotein endopeptidase {ECO:0000313|EMBL:KAJ37147.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3723_9
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8601..9095
DNA (495bp) protein (165aa)
Ribosomal-protein-alanine N-acetyltransferase protein {ECO:0000313|EMBL:CCM74148.1}; EC=2.3.1.128 {ECO:0000313|EMBL:CCM74148.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
rimI; ribosomal-protein-alanine N-acetyltransferase (EC:2.3.1.128); K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
Ribosomal-protein-alanine N-acetyltransferase protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PJR8_9RHIZ
SCNpilot_cont_500_bf_scaffold_3723_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9140..9568
DNA (429bp) protein (143aa)
Fur family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00035CF88A
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:EJC74544.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
ferric uptake regulator family protein; K03711 Fur family transcriptional regulator, ferric uptake regulator
SCNpilot_cont_500_bf_scaffold_3723_11
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9582..10379
DNA (798bp) protein (266aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PC68_9RHIZ
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:CCM74146.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
olsA; lyso-ornithine lipid:acyl-ACP O-acyltransferase OlsA
SCNpilot_cont_500_bf_scaffold_3723_12
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10429..11841
DNA (1413bp) protein (471aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000255|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000255|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000255|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01864}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
(dimethylallyl)adenosine tRNA methylthiotransferase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000372F841
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
SCNpilot_cont_500_bf_scaffold_3723_13
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11950..12996
DNA (1047bp) protein (349aa)
Phosphate starvation-inducible protein, PhoH-like protein n=1 Tax=Rhizobium sp. RepID=L0NA05_RHISP rbh
Phosphate starvation-inducible protein, PhoH-like protein {ECO:0000313|EMBL:CCF17755.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
PhoH family protein; K06217 phosphate starvation-inducible protein PhoH and related proteins rbh
SCNpilot_cont_500_bf_scaffold_3723_14
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13015..13521
DNA (507bp) protein (169aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Endoribonuclease YbeY n=1 Tax=Rhizobium sp. CF080 RepID=J2KCI8_9RHIZ
putative metalloprotease
SCNpilot_cont_500_bf_scaffold_3723_15
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13534..14562
DNA (1029bp) protein (343aa)
CBS domain-containing protein n=1 Tax=Rhizobium sp. CF080 RepID=J2SYY3_9RHIZ
Hemolysin {ECO:0000313|EMBL:KGD86459.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3723_16
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14650..16233
DNA (1584bp) protein (528aa)
lnt; apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-]
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148, ECO:0000256|SAAS:SAAS00250216}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148, ECO:0000256|SAAS:SAAS00088950};; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
Apolipoprotein N-acyltransferase n=2 Tax=Rhizobium/Agrobacterium group RepID=LNT_AGRRK
SCNpilot_cont_500_bf_scaffold_3723_17
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16518..16913
DNA (396bp) protein (132aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J8B5_AGRRK
transcriptional regulator protein
Putative transcriptional regulator {ECO:0000313|EMBL:EJK82812.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
Displaying 17 items

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