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SCNpilot_cont_500_bf_scaffold_6538

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_6538_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..531)
DNA (531bp) protein (177aa)
Long-chain-fatty-acid--CoA ligase LcfB {ECO:0000313|EMBL:EYR83959.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EYR83959.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
malonyl-CoA synthase (EC:6.2.1.-)
Long-chain-fatty-acid--CoA ligase LcfB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYK1_9RHIZ
SCNpilot_cont_500_bf_scaffold_6538_2
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(528..1955)
DNA (1428bp) protein (476aa)
Malonyl-CoA decarboxylase (MCD) (EC:4.1.1.9) rbh
MCD, Malonyl-CoA decarboxylase MCD n=1 Tax=Rhizobium meliloti RepID=UPI0002FBB88E rbh
Uncharacterized protein {ECO:0000313|EMBL:AAK64739.2}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_cont_500_bf_scaffold_6538_3
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2197..2856
DNA (660bp) protein (220aa)
Transcriptional regulator, GntR family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ILM0_METNO
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACL61995.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_500_bf_scaffold_6538_4
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2959..3771
DNA (813bp) protein (271aa)
ABC transporter; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] rbh
ABC transporter related protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FA43_9RHIZ rbh
ABC transporter related protein {ECO:0000313|EMBL:EHS50229.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_cont_500_bf_scaffold_6538_5
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3761..4357
DNA (597bp) protein (199aa)
iron siderophore-binding protein n=1 Tax=Rhizobium gallicum RepID=UPI00036BF3DC
ABC-type transporter, periplasmic subunit {ECO:0000313|EMBL:EUB99952.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
fhuD; siderophore receptor component FhuD; K02016 iron complex transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_6538_6
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4646..6619
DNA (1974bp) protein (658aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Rhizobium sp. CF080 RepID=J3C404_9RHIZ rbh
Iron-hydroxamate transporter, permease subunit {ECO:0000313|EMBL:CDN57526.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
fhuB; iron-hydroxamate transporter permease subunit; K02015 iron complex transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_6538_7
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6700..7104
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B2FB05
Uncharacterized protein {ECO:0000313|EMBL:AJD45341.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_6538_8
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7164..7577)
DNA (414bp) protein (138aa)
Lectin-like protein BA14k n=1 Tax=Rhizobium sp. RepID=L0NDK7_RHISP
Lectin-like protein BA14k {ECO:0000313|EMBL:CCF18901.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
BA14K family protein
SCNpilot_cont_500_bf_scaffold_6538_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7706..8203)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000364FC5C
Stress response protein YciF 2 {ECO:0000313|EMBL:AJD42619.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_6538_10
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8292..9407)
DNA (1116bp) protein (372aa)
LacI family transcriptional regulator n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FZA9_RHIML
LacI family transcriptional regulator {ECO:0000313|EMBL:EHK77596.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
ccpA2; catabolite control protein A rbh
SCNpilot_cont_500_bf_scaffold_6538_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9641..10429
DNA (789bp) protein (263aa)
Deoxyfructosyl-amino acid transporter periplasmic binding protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHQ9_RHIRD
Deoxyfructosyl-amino acid transporter periplasmic binding protein {ECO:0000313|EMBL:EGP54128.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
extracellular solute-binding protein
Displaying 11 items

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