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SCNpilot_cont_500_bf_scaffold_2971_9

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_63_7

partial RP 38 / 55 MC: 2 BSCG 37 / 51 MC: 3 ASCG 10 / 38 MC: 2
Location: 8352..8894

Top 3 Functional Annotations

Value Algorithm Source
ECF family RNA polymerase sigma factor n=2 Tax=Agrobacterium RepID=F0L8W2_AGRSH similarity UNIREF
DB: UNIREF100
  • Identity: 73.1
  • Coverage: 182.0
  • Bit_score: 262
  • Evalue 4.20e-67
ECF family RNA polymerase sigma factor {ECO:0000313|EMBL:CDN92397.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.7
  • Coverage: 182.0
  • Bit_score: 267
  • Evalue 1.10e-68
sigD; ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 73.1
  • Coverage: 182.0
  • Bit_score: 262
  • Evalue 1.30e-67

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Taxonomy

Agrobacterium tumefaciens → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 543
ATGACGGACGCCCTTTCGGAAGAGACATTGAAGCGGATGATGTTGCGTTCCCTCGACGGGGACGAGGGCGCCTACCGGCATCTGCTGCAGGCGCTGCGTGGCCTGCTGCTCGCCTATTACCGGCGGCGACTGGCCCTCGGCGCCCGGAGCGACCTGGAAGATCTGGTGCAGGATACGCTGCTGGCCCTGCATGCGCGCCGTGACACCTATGACCGGACGCGGCCATTCACCGCCTGGTTCTTCTCGATCGCCCGCTACAAGCTGGTCGATCATTTCCGGCGCGGCGGCGGGCGGATGCTGGTCGATCTCGACGAGACGCTCGAAGCTGCTTCCGGCGAGGATGCGCTGACCGCCCGCATCGATGTCGAACGCCTGCTCGACGGCCTGCCGCCGCGCCAGCGCGAGCTGCTGCGCCGCGTCAAGCTCGACGGCGAATCGATTGCCGAAGCCGCCGGCCGCGCCGGCCAGACCGAAACCGCCGCGCGGGTCGGCATCCATAGAAGCCTGAAGGCCCTGGCCAGAAAACTGCGGGGAGAGACGTGA
PROTEIN sequence
Length: 181
MTDALSEETLKRMMLRSLDGDEGAYRHLLQALRGLLLAYYRRRLALGARSDLEDLVQDTLLALHARRDTYDRTRPFTAWFFSIARYKLVDHFRRGGGRMLVDLDETLEAASGEDALTARIDVERLLDGLPPRQRELLRRVKLDGESIAEAAGRAGQTETAARVGIHRSLKALARKLRGET*