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SCNpilot_cont_500_bf_scaffold_2971

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2971_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1304
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036BE867
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor {ECO:0000313|EMBL:EGP56317.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
outer membrane iron receptor protein; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_500_bf_scaffold_2971_2
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1563..3752
DNA (2190bp) protein (730aa)
Anthranilate synthase {ECO:0000313|EMBL:EJZ19747.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EJZ19747.1};; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
trpE; anthranilate synthase; K13503 anthranilate synthase [EC:4.1.3.27]
Anthranilate synthase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VLA8_9RHIZ
SCNpilot_cont_500_bf_scaffold_2971_3
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3893..4603)
DNA (711bp) protein (237aa)
Putative oxidoreductase NAD protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UCT3_9RHIZ
bluB; cob(II)yrinic acid a,c-diamide reductase
Putative oxidoreductase {ECO:0000313|EMBL:GAJ90636.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_cont_500_bf_scaffold_2971_4
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4879..5799
DNA (921bp) protein (307aa)
Cation efflux protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IG11_9RHIZ
Cation efflux protein {ECO:0000313|EMBL:EPE97928.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
cation efflux protein
SCNpilot_cont_500_bf_scaffold_2971_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5796..6260
DNA (465bp) protein (155aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium gro
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPC2_RHITR
queF; 7-cyano-7-deazaguanine reductase
SCNpilot_cont_500_bf_scaffold_2971_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6310..7098)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J7D9_AGRRK
hypothetical protein; K09945 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM27246.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_2971_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7310..7888
DNA (579bp) protein (193aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpP; ATP-dependent Clp protease proteolytic subunit; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V266_9RHIZ
SCNpilot_cont_500_bf_scaffold_2971_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7956..8168)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI000362A961
Uncharacterized protein {ECO:0000313|EMBL:KDR90250.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2971_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8352..8894
DNA (543bp) protein (181aa)
ECF family RNA polymerase sigma factor n=2 Tax=Agrobacterium RepID=F0L8W2_AGRSH
ECF family RNA polymerase sigma factor {ECO:0000313|EMBL:CDN92397.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
sigD; ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_2971_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8891..9535
DNA (645bp) protein (215aa)
Hypothetical conserved protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3Q4J3_RHIE6
hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ACE94124.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_cont_500_bf_scaffold_2971_11
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9634..10818
DNA (1185bp) protein (395aa)
benzoate transporter n=1 Tax=Rhizobium radiobacter RepID=UPI0003647C1B rbh
Benzoate transporter {ECO:0000313|EMBL:KGE83739.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
Benzoate transporter rbh
SCNpilot_cont_500_bf_scaffold_2971_12
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11113..11733
DNA (621bp) protein (207aa)
leuA; 2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13]
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
2-isopropylmalate synthase n=1 Tax=Rhizobium sp. CF142 RepID=J2KYW6_9RHIZ
Displaying 12 items

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