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SCNpilot_cont_500_bf_scaffold_4157_10

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_63_7

partial RP 38 / 55 MC: 2 BSCG 37 / 51 MC: 3 ASCG 10 / 38 MC: 2
Location: 7680..8348

Top 3 Functional Annotations

Value Algorithm Source
membrane protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B4BB3D similarity UNIREF
DB: UNIREF100
  • Identity: 65.6
  • Coverage: 221.0
  • Bit_score: 284
  • Evalue 9.80e-74
Lipopolysccharide assembly LptC-related protein {ECO:0000313|EMBL:AJD39802.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.6
  • Coverage: 221.0
  • Bit_score: 284
  • Evalue 1.80e-73
transmembrane protein; K11719 lipopolysaccharide export system protein LptC similarity KEGG
DB: KEGG
  • Identity: 62.0
  • Coverage: 221.0
  • Bit_score: 264
  • Evalue 4.30e-68

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Taxonomy

Rhizobium gallicum → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 669
ATGCTGAACAGCGTACACACACCTGGGCTCGAACTTGCCGGCGGGCCTTCACCGCAGGACGCTTATCGCGTGGCGCTGCGGCATTCGGCACGGGTGCGGCGGCTGAAGGTGCTGCTGCCGGCAGCCGCCGTGGCGATCACCTTTGCCTTCATCGCCGTCTCCATCGTGCGCGCCTATCTGCGTGAAAACATCCAGCTCGAATCCGCCCGCATCGAAAACGGCAAGGTGGTGATGGAAAAGCCGGCCATTTCCGGCCGCAACGCCGACGGCATCAATTATTCCATGCTCGCCGAGCGGGCGCTGCAGGATATCCGCGATCCCAACATGATCACGCTCGAGACCATCAAGGCGGCGGTGCCGGTCAGCGACAAGGTGATCGCCCGCGTCGACGCCTCGGAAGGCATCTACGATCGCGCCAGCGACAAGCTCAACATGACCCGGCCGTTCACCGTGACGCTGAACACCGGGCTGGAGGCAAAGTTCCAGTCGGCCTTCCTCGACATCAAGTCCGGGCAGATGAGCACGGACGAACCGGTTTCCATCGCGTCGGACCAGGCTTCCATTCTTGCGCAGACACTCAAGATGACGGATAAGGGACGCACCATTACTTTCGAAGGCAACGTGCGGATGAACATCACGCCGGCGCAGCTTCGCAACAAGGCTCAATGA
PROTEIN sequence
Length: 223
MLNSVHTPGLELAGGPSPQDAYRVALRHSARVRRLKVLLPAAAVAITFAFIAVSIVRAYLRENIQLESARIENGKVVMEKPAISGRNADGINYSMLAERALQDIRDPNMITLETIKAAVPVSDKVIARVDASEGIYDRASDKLNMTRPFTVTLNTGLEAKFQSAFLDIKSGQMSTDEPVSIASDQASILAQTLKMTDKGRTITFEGNVRMNITPAQLRNKAQ*