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SCNpilot_cont_500_bf_scaffold_4157

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4157_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..192)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V003_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN86331.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
olsB; ornithine:acyl-ACP N-acyltransferase OlsB
SCNpilot_cont_500_bf_scaffold_4157_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(265..2607)
DNA (2343bp) protein (781aa)
Integral membrane sensor hybrid histidine kinase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZMZ8_RHILW
integral membrane sensor hybrid histidine kinase
Integral membrane sensor hybrid histidine kinase {ECO:0000313|EMBL:ACI53339.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_cont_500_bf_scaffold_4157_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2664..3161)
DNA (498bp) protein (166aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Lipoprotein signal peptidase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LEQ1_RHITR
lspA; lipoprotein signal peptidase
SCNpilot_cont_500_bf_scaffold_4157_4
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3158..4018)
DNA (861bp) protein (287aa)
tRNA/rRNA methyltransferase SpoU n=1 Tax=Rhizobium sp. Pop5 RepID=K0W5I0_9RHIZ
tRNA/rRNA methyltransferase SpoU {ECO:0000313|EMBL:EJZ22263.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
tRNA/rRNA methyltransferase SpoU; K03437 RNA methyltransferase, TrmH family
SCNpilot_cont_500_bf_scaffold_4157_5
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4015..5184)
DNA (1170bp) protein (390aa)
SAM-dependent methyltransferase protein; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
Putative SAM-dependent methyltransferase n=1 Tax=Rhizobium sp. CF142 RepID=J2B2W5_9RHIZ
Putative SAM-dependent methyltransferase {ECO:0000313|EMBL:EJJ30300.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_cont_500_bf_scaffold_4157_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5223..5678
DNA (456bp) protein (152aa)
Carbon monoxide dehydrogenase subunit G n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LII1_RHITR
carbon monoxide dehydrogenase subunit G
Carbon monoxide dehydrogenase subunit G {ECO:0000313|EMBL:AGB69880.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_4157_7
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5686..6039)
DNA (354bp) protein (118aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037D958E
transmembrane protein
Uncharacterized protein {ECO:0000313|EMBL:EJZ22258.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_cont_500_bf_scaffold_4157_8
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6184..6483)
DNA (300bp) protein (100aa)
Integration host factor subunit beta n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=IHFB_AGRVS
ihfB; integration host factor subunit beta; K05788 integration host factor subunit beta
Integration host factor subunit beta {ECO:0000255|HAMAP-Rule:MF_00381}; Short=IHF-beta {ECO:0000255|HAMAP-Rule:MF_00381};; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_500_bf_scaffold_4157_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6511..7470)
DNA (960bp) protein (320aa)
signal peptide peptidase SppA, 36K type; K04773 protease IV [EC:3.4.21.-]
Clp protease n=1 Tax=Rhizobium leguminosarum RepID=UPI0003759F3F
Clp protease {ECO:0000313|EMBL:AHF82172.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_cont_500_bf_scaffold_4157_10
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7680..8348
DNA (669bp) protein (223aa)
membrane protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B4BB3D
Lipopolysccharide assembly LptC-related protein {ECO:0000313|EMBL:AJD39802.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
transmembrane protein; K11719 lipopolysaccharide export system protein LptC
SCNpilot_cont_500_bf_scaffold_4157_11
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8361..8954
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3C367_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGD86485.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
conserved exported protein of unknown function
SCNpilot_cont_500_bf_scaffold_4157_12
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8912..9664
DNA (753bp) protein (251aa)
ABC transporter ATP-binding component; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter ATP-binding protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B3A393
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJD39804.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCNpilot_cont_500_bf_scaffold_4157_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9832..10806
DNA (975bp) protein (325aa)
RNA polymerase sigma-54 factor n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFB3_RHITR
rpoNch; RNA polymerase sigma-54 factor
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_4157_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10748..11329
DNA (582bp) protein (194aa)
rpoN; RNA polymerase factor sigma-54 (EC:2.7.7.6); K03092 RNA polymerase sigma-54 factor
RNA polymerase sigma-54 factor n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0H8Z6_RHIRD
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
SCNpilot_cont_500_bf_scaffold_4157_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11554..12123
DNA (570bp) protein (190aa)
Sigma-54 modulation protein n=4 Tax=Rhizobium/Agrobacterium group RepID=K5CP42_RHILU rbh
putative sigma (54) modulation protein rbh
Sigma-54 modulation protein {ECO:0000313|EMBL:EMS99277.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
SCNpilot_cont_500_bf_scaffold_4157_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12201..12665
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIH0_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB69870.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_4157_17
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12754..13356)
DNA (603bp) protein (201aa)
Protein GrpE n=1 Tax=Rhizobium sp. CF080 RepID=J3BWT1_9RHIZ
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
grpE; Protein grpE HSP-70 cofactor; K03687 molecular chaperone GrpE
SCNpilot_cont_500_bf_scaffold_4157_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13565..14653)
DNA (1089bp) protein (363aa)
Heat-inducible transcription repressor hrcA n=2 Tax=Rhizobium leguminosarum RepID=Q3S3E1_RHILE
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=384 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum.;"
hrcA; heat-inducible transcription repressor HrcA
Displaying 18 items

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