ggKbase home page

SCNpilot_cont_500_bf_scaffold_4157_14

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_63_7

partial RP 38 / 55 MC: 2 BSCG 37 / 51 MC: 3 ASCG 10 / 38 MC: 2
Location: 10748..11329

Top 3 Functional Annotations

Value Algorithm Source
rpoN; RNA polymerase factor sigma-54 (EC:2.7.7.6); K03092 RNA polymerase sigma-54 factor similarity KEGG
DB: KEGG
  • Identity: 85.7
  • Coverage: 189.0
  • Bit_score: 326
  • Evalue 8.00e-87
RNA polymerase sigma-54 factor n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0H8Z6_RHIRD similarity UNIREF
DB: UNIREF100
  • Identity: 85.7
  • Coverage: 189.0
  • Bit_score: 326
  • Evalue 2.60e-86
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.7
  • Coverage: 189.0
  • Bit_score: 326
  • Evalue 3.60e-86

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Agrobacterium tumefaciens → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 582
GTGCTGGTCAACCAGTCCTACTACGCCGAGGTCAGCCGCCACAAACACCGGCCGGGTGAAGACCAGGCCTTCCTCTCCGAATGTCTGCAGACCGCCAACTGGCTGACGCGCAGCCTCGACCAGCGGGCGAAGACCATCGTCAAGGTGGCGAGCGAAATCGTGCGCCAGCAGGACGCCTTCCTCGTCCACGGCGTCGATCATCTCAGGCCGCTCAACCTGAAGACGGTGGCGGAGGCGATCAAGATGCACGAATCGACCGTCAGCCGCGTCACCTCCAACAAATACATGCTGACGCCGCGCGGGCTGTTCGAACTCAAATATTTCTTCACCGTCTCCATCGGGTCCGCCGAGGGCGGCGAGAGCCATTCGGCGGAGGCGGTGCGCCACCGCATCCGCGCCATGATCGCCCAGGAGGCGGCCGATGCGGTGCTTTCCGACGACGATATCGTCGACAGCCTGAAAGCGGCCGGTGTCGATCTGGCGCGCCGCACGGTCGCCAAATATCGCGAGGCGATGAACATTCCCTCCTCCGTGCAGCGGCGGCGGGAGAAACGGGCGCTGTCCAAGGCCGGCCAAGGCTGA
PROTEIN sequence
Length: 194
VLVNQSYYAEVSRHKHRPGEDQAFLSECLQTANWLTRSLDQRAKTIVKVASEIVRQQDAFLVHGVDHLRPLNLKTVAEAIKMHESTVSRVTSNKYMLTPRGLFELKYFFTVSIGSAEGGESHSAEAVRHRIRAMIAQEAADAVLSDDDIVDSLKAAGVDLARRTVAKYREAMNIPSSVQRRREKRALSKAGQG*