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SCNpilot_cont_500_bf_scaffold_5141

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5141_1
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1..1254
DNA (1254bp) protein (418aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
glyA; glycine/serine hydroxymethyltransferase; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]
Serine hydroxymethyltransferase n=2 Tax=Microbacterium RepID=H8E189_9MICO
SCNpilot_cont_500_bf_scaffold_5141_2
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1251..2132
DNA (882bp) protein (294aa)
5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00035CB6B9 rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_5141_3
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2256..3500
DNA (1245bp) protein (415aa)
integrase n=1 Tax=Humibacter albus RepID=UPI0003B7079A rbh
Integrase {ECO:0000313|EMBL:KHK98339.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
integrase catalytic domain-containing protein rbh
SCNpilot_cont_500_bf_scaffold_5141_4
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3639..4580)
DNA (942bp) protein (314aa)
exopolyphosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037A7D67 rbh
Exopolyphosphatase {ECO:0000313|EMBL:KHK99326.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
SCNpilot_cont_500_bf_scaffold_5141_5
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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4847..5794
DNA (948bp) protein (316aa)
Pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530};; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_00215}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
coaA; panthothenate kinase; K00867 type I pantothenate kinase [EC:2.7.1.33]
Pantothenate kinase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AWF5_9MICO rbh
SCNpilot_cont_500_bf_scaffold_5141_6
unknown

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6117..6875
DNA (759bp) protein (253aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5141_7
unknown

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6880..8196
DNA (1317bp) protein (439aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5141_8
Bifidobacterium gallicum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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8186..9550
DNA (1365bp) protein (455aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003620539
Uncharacterized protein {ECO:0000313|EMBL:KFI59683.1}; TaxID=561180 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallicum DSM 20093 = LMG 11596.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5141_9
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(9723..9959)
DNA (237bp) protein (79aa)
L-2-hydroxyglutarate oxidase {ECO:0000313|EMBL:AIY16895.1}; EC=1.1.3.15 {ECO:0000313|EMBL:AIY16895.1};; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
hypothetical protein n=1 Tax=Pseudoclavibacter faecalis RepID=UPI00036C2B0C
hydroxyglutarate oxidase
SCNpilot_cont_500_bf_scaffold_5141_10
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9956..10585)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002E262ED rbh
Uncharacterized protein {ECO:0000313|EMBL:ERG64714.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
Acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
SCNpilot_cont_500_bf_scaffold_5141_11
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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10780..12351
DNA (1572bp) protein (524aa)
Putative long-chain-fatty-acid--CoA ligase n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9V2E0_9ACTO rbh
Putative long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EGD40517.1}; TaxID=408672 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
Putative long-chain-fatty-acid--CoA ligase rbh
SCNpilot_cont_500_bf_scaffold_5141_12
Propionibacterium acidipropionici, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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12445..13197
DNA (753bp) protein (251aa)
PE-PGRS family protein n=1 Tax=Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM 6432 / NBRC 12425 / NCIMB 8070) RepID=K7S550_PROA4
PE-PGRS family protein
PE-PGRS family protein {ECO:0000313|EMBL:AFV89747.1}; TaxID=1171373 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM; 6432 / NBRC 12425 / NCIMB 8070).;"
SCNpilot_cont_500_bf_scaffold_5141_13
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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13194..13565
DNA (372bp) protein (124aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=408672 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
acpS; holo-[acyl-carrier-protein] synthase (EC:2.7.8.7); K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
Holo-[acyl-carrier-protein] synthase n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9V2E2_9ACTO
SCNpilot_cont_500_bf_scaffold_5141_14
Propionibacterium acidipropionici, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(13549..14541)
DNA (993bp) protein (331aa)
NH(3)-dependent NAD(+) synthetase (EC:6.3.1.5) rbh
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; TaxID=1171373 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM; 6432 / NBRC 12425 / NCIMB 8070).;"
NH(3)-dependent NAD(+) synthetase n=1 Tax=Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM 6432 / NBRC 12425 / NCIMB 8070) RepID=K7RTM4_PROA4 rbh
SCNpilot_cont_500_bf_scaffold_5141_15
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(14857..16413)
DNA (1557bp) protein (519aa)
asnB; putative asparagine synthetase (EC:6.3.5.4); K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
Putative asparagine synthetase {ECO:0000313|EMBL:BAK37899.1}; EC=6.3.5.4 {ECO:0000313|EMBL:BAK37899.1};; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
Asparagine synthetase n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XFW5_MICPN
SCNpilot_cont_500_bf_scaffold_5141_16
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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16565..16828
DNA (264bp) protein (88aa)
Acyl carrier protein n=1 Tax=Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM 6432 / NBRC 12425 / NCIMB 8070) RepID=K7RP17_PROA4
Acyl carrier protein {ECO:0000313|EMBL:KJR12038.1}; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
Acyl carrier protein
SCNpilot_cont_500_bf_scaffold_5141_17
Propionibacterium acidipropionici, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16927..17526
DNA (600bp) protein (200aa)
Hexapeptide transferase family protein (EC:2.3.1.30)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=1171373 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM; 6432 / NBRC 12425 / NCIMB 8070).;"
Serine acetyltransferase n=1 Tax=Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM 6432 / NBRC 12425 / NCIMB 8070) RepID=K7RXN9_PROA4
SCNpilot_cont_500_bf_scaffold_5141_18
Propionibacterium acidipropionici, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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17526..18941
DNA (1416bp) protein (472aa)
Putative glycosyl transferase / polysaccharide biosynthesis domain-containing protein n=1 Tax=Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM 6432 / NBRC 12425 / NCIMB 8070) RepID=K7SKG2_PROA4 rbh
Putative glycosyl transferase / polysaccharide biosynthesis domain-containing protein rbh
Putative glycosyl transferase / polysaccharide biosynthesis domain-containing protein {ECO:0000313|EMBL:AFV89760.1}; TaxID=1171373 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM; 6432 / NBRC 12425 / NCIMB 8070).;"
SCNpilot_cont_500_bf_scaffold_5141_19
Propionibacterium acidipropionici, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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18944..20350
DNA (1407bp) protein (469aa)
Glycosyl transferase group 1 n=1 Tax=Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM 6432 / NBRC 12425 / NCIMB 8070) RepID=K7SKE4_PROA4 rbh
Glycosyl transferase group 1 rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:AFV89750.1}; TaxID=1171373 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM; 6432 / NBRC 12425 / NCIMB 8070).;"
SCNpilot_cont_500_bf_scaffold_5141_20
Propionibacterium acidipropionici, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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20433..21392
DNA (960bp) protein (320aa)
F5/8 type C domain-containing protein n=1 Tax=Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM 6432 / NBRC 12425 / NCIMB 8070) RepID=K7RP21_PROA4
F5/8 type C domain-containing protein
F5/8 type C domain-containing protein {ECO:0000313|EMBL:AFV89749.1}; TaxID=1171373 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM; 6432 / NBRC 12425 / NCIMB 8070).;"
Displaying 20 items

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