ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 4.90 Longest contig: 27.55 Kbp Bin length: 1.63 Mbp GC content: 69.79 %

Contigs count: 662 Features count: 2073 rRNAs count: 0 tRNAs count: 16

Genome completeness

partial RP 22 / 55 BSCG 28 / 51 ASCG 6 / 38 MC: 1

Displaying items 501-550 of 662 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_cont_500_bf_scaffold_34929 Species: Microbacterium sp. TS-1 (100%)	2	1747 bp	65.14	3.01	99.94
SCNpilot_cont_500_bf_scaffold_48794 Species: Microbacterium sp. oral taxon 186 (50%)	2	1330 bp	66.99	5.83	100.83
SCNpilot_cont_500_bf_scaffold_28919 Species: Microbacterium azadirachtae (50%)	2	2024 bp	73.22	3.21	95.90
SCNpilot_cont_500_bf_scaffold_66046 Species: Microbacterium oleivorans (50%)	2	1021 bp	66.99	11.51	74.93
SCNpilot_cont_500_bf_scaffold_22581 Species: Microbacterium oleivorans (100%)	2	3239 bp	69.84	4.09	100.03
SCNpilot_cont_500_bf_scaffold_41821 Species: Microbacterium sp. oral taxon 186 (50%)	2	1510 bp	72.19	4.30	94.97
SCNpilot_cont_500_bf_scaffold_46593 Species: Microbacterium hominis (50%)	2	1384 bp	70.88	4.88	97.33
SCNpilot_cont_500_bf_scaffold_49434 Species: Microbacterium sp. C448 (100%)	2	1318 bp	67.83	3.41	96.74
SCNpilot_cont_500_bf_scaffold_21128 Species: Microbacterium oleivorans (100%)	2	2572 bp	74.07	3.79	100.08
SCNpilot_cont_500_bf_scaffold_58132 Species: Microbacterium sp. C448 (100%)	2	1153 bp	64.18	2.82	88.20
SCNpilot_cont_500_bf_scaffold_53373 Species: Microbacterium laevaniformans (50%)	2	1240 bp	67.82	7.26	81.53
SCNpilot_cont_500_bf_scaffold_40081 Species: Microbacterium laevaniformans (50%)	2	1563 bp	69.67	5.60	86.95
SCNpilot_cont_500_bf_scaffold_52813 Species: Arthrobacter sp. FB24 (50%)	2	1250 bp	65.84	3.80	100.08
SCNpilot_cont_500_bf_scaffold_40595 Species: Microbacterium sp. MRS-1 (50%)	2	2264 bp	67.14	5.41	99.78
SCNpilot_cont_500_bf_scaffold_40851 Species: Microbacterium laevaniformans (50%)	2	1540 bp	72.21	3.25	78.70
SCNpilot_cont_500_bf_scaffold_63719 Species: Microbacterium sp. oral taxon 186 (50%)	2	1058 bp	70.98	4.25	83.93
SCNpilot_cont_500_bf_scaffold_62425 Species: Microbacterium hominis (50%)	2	1080 bp	71.20	3.47	100.28
SCNpilot_cont_500_bf_scaffold_50418 Species: Streptomyces ipomoeae (50%)	2	1297 bp	67.69	4.24	75.87
SCNpilot_cont_500_bf_scaffold_67148 Species: BJP_IG2157_Actinomycetales_63_19 (50%)	2	1004 bp	69.22	4.23	100.40
SCNpilot_cont_500_bf_scaffold_39201 Species: Microbacterium hominis (50%)	2	1590 bp	66.54	4.25	100.00
SCNpilot_cont_500_bf_scaffold_34698 Species: Propionibacterium acidipropionici (50%)	2	1756 bp	71.01	4.41	96.01
SCNpilot_cont_500_bf_scaffold_57295 Species: Microbacterium oleivorans (50%)	2	1168 bp	71.75	4.07	96.06
SCNpilot_cont_500_bf_scaffold_63215 Species: Microbacterium oleivorans (50%)	2	1067 bp	72.07	3.51	98.69
SCNpilot_cont_500_bf_scaffold_32620 Species: Microbacterium laevaniformans (100%)	2	1842 bp	73.78	5.29	100.00
SCNpilot_cont_500_bf_scaffold_46609 Species: Microbacterium sp. MRS-1 (50%)	2	1383 bp	70.43	3.25	99.13
SCNpilot_cont_500_bf_scaffold_43550 Species: Microbacterium oleivorans (100%)	2	1462 bp	69.08	5.64	102.39
SCNpilot_cont_500_bf_scaffold_30151 Species: Isoptericola variabilis (50%)	2	1958 bp	70.28	4.47	98.98
SCNpilot_cont_500_bf_scaffold_29529 Species: Tetrasphaera australiensis (100%)	2	1993 bp	71.00	5.27	101.61
SCNpilot_cont_500_bf_scaffold_42489 Species: Microbacterium sp. MRS-1 (50%)	2	1490 bp	70.54	5.03	98.86
SCNpilot_cont_500_bf_scaffold_59536 Species: Microbacterium laevaniformans (50%)	2	1129 bp	67.32	2.66	87.69
SCNpilot_cont_500_bf_scaffold_33205 Species: Microbacterium laevaniformans (50%)	2	1816 bp	66.85	4.27	81.77
SCNpilot_cont_500_bf_scaffold_41590 Species: Microbacterium mangrovi (50%)	2	1516 bp	68.80	2.97	93.21
SCNpilot_cont_500_bf_scaffold_25990 Species: Microbacterium sp. oral taxon 186 (50%)	2	2198 bp	71.47	3.98	99.64
SCNpilot_cont_500_bf_scaffold_65804 Species: Microbacterium laevaniformans (50%)	2	1025 bp	69.46	3.90	85.46
SCNpilot_cont_500_bf_scaffold_38586 Species: Microbacterium mangrovi (50%)	2	2503 bp	70.32	3.40	64.96
SCNpilot_cont_500_bf_scaffold_55647 Species: Microbacterium sp. C448 (50%)	2	1197 bp	67.25	2.51	87.47
SCNpilot_cont_500_bf_scaffold_28700 Species: Microbacterium laevaniformans (50%)	2	2035 bp	68.85	5.77	92.14
SCNpilot_cont_500_bf_scaffold_43565 Species: Microbacterium maritypicum (50%)	2	1461 bp	69.61	4.62	90.55
SCNpilot_cont_500_bf_scaffold_37863 Species: Microbacterium laevaniformans (100%)	2	1635 bp	70.64	3.98	94.50
SCNpilot_cont_500_bf_scaffold_33216 Species: Microbacterium laevaniformans (50%)	2	1816 bp	70.59	5.64	92.68
SCNpilot_cont_500_bf_scaffold_63748 Species: Streptomyces griseorubens (50%)	2	1058 bp	74.57	3.31	89.04
SCNpilot_cont_500_bf_scaffold_60097 Species: Microbacterium hominis (50%)	2	1120 bp	66.70	8.04	93.75
SCNpilot_cont_500_bf_scaffold_47286 Species: Microbacterium sp. oral taxon 186 (50%)	2	1367 bp	71.32	6.40	96.34
SCNpilot_cont_500_bf_scaffold_34724 Species: Gordonia soli (50%)	2	1755 bp	66.32	3.56	99.83
SCNpilot_cont_500_bf_scaffold_32644 Species: Microbacterium sp. MEJ108Y (50%)	2	1841 bp	71.16	4.07	98.59
SCNpilot_cont_500_bf_scaffold_25239 Species: Microbacterium laevaniformans (50%)	2	2246 bp	64.38	4.23	97.11
SCNpilot_cont_500_bf_scaffold_52595 Species: Microbacterium hominis (50%)	2	1254 bp	67.70	2.59	100.24
SCNpilot_cont_500_bf_scaffold_20072 Species: Microbacterium sp. oral taxon 186 (50%)	2	2669 bp	70.18	3.65	96.44
SCNpilot_cont_500_bf_scaffold_44357 Species: Micromonospora carbonacea (50%)	2	1440 bp	65.90	3.99	100.00
SCNpilot_cont_500_bf_scaffold_32906 Species: Mobilicoccus pelagius (50%)	2	1829 bp	70.04	4.24	79.72

Displaying items 501-550 of 662 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_P_inoc_Microbacterium_69_20) and add all its contigs / scaffolds to the organism you choose below

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SCNpilot_P_inoc_Microbacterium_69_20

SCNPILOT_CONT_500_BF_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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