ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 4.90 Longest contig: 27.55 Kbp Bin length: 1.63 Mbp GC content: 69.79 %

Contigs count: 662 Features count: 2073 rRNAs count: 0 tRNAs count: 16

Genome completeness

partial RP 22 / 55 BSCG 28 / 51 ASCG 6 / 38 MC: 1

Displaying items 451-500 of 662 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_cont_500_bf_scaffold_60251 Species: Microbacterium hominis (100%)	2	1117 bp	71.53	2.91	86.21
SCNpilot_cont_500_bf_scaffold_51416 Species: Microbacterium sp. MRS-1 (100%)	2	1277 bp	72.12	6.46	100.08
SCNpilot_cont_500_bf_scaffold_54280 Species: Microbacterium testaceum (50%)	2	1224 bp	72.39	3.68	88.24
SCNpilot_cont_500_bf_scaffold_62098 Species: Propionibacterium freudenreichii (50%)	2	1086 bp	65.19	4.14	99.45
SCNpilot_cont_500_bf_scaffold_30326 Species: marine actinobacterium PHSC20C1 (50%)	2	1949 bp	67.16	3.85	99.90
SCNpilot_cont_500_bf_scaffold_34368 Species: Microbacterium laevaniformans (100%)	2	1769 bp	69.87	3.39	97.51
SCNpilot_cont_500_bf_scaffold_90382 Species: Microbacterium sp. CH12i (50%)	2	1350 bp	65.26	2.96	96.00
SCNpilot_cont_500_bf_scaffold_25649 Species: Gordonia sp. NB4-1Y (50%)	2	2221 bp	69.52	4.73	99.41
SCNpilot_cont_500_bf_scaffold_60770 Species: Microbacterium sp. TS-1 (50%)	2	1108 bp	69.40	3.38	90.43
SCNpilot_cont_500_bf_scaffold_61663 Species: Mycobacterium rhodesiae (50%)	2	1093 bp	66.42	4.12	63.40
SCNpilot_cont_500_bf_scaffold_31956 Species: Gordonia rhizosphera (50%)	2	1870 bp	69.41	5.61	82.62
SCNpilot_cont_500_bf_scaffold_99108 Species: Microbacterium hominis (50%)	2	1268 bp	67.82	3.94	79.97
SCNpilot_cont_500_bf_scaffold_50098 Species: Microbacterium oleivorans (50%)	2	1304 bp	69.79	6.13	100.08
SCNpilot_cont_500_bf_scaffold_26751 Species: Microbacterium mangrovi (50%)	2	2151 bp	70.20	4.07	72.38
SCNpilot_cont_500_bf_scaffold_56389 Species: Microbacterium sp. UCD-TDU (50%)	2	1184 bp	73.14	4.01	100.08
SCNpilot_cont_500_bf_scaffold_27169 Species: Microbacterium laevaniformans (100%)	2	2124 bp	67.28	7.42	89.83
SCNpilot_cont_500_bf_scaffold_47709 Species: Leifsonia rubra (50%)	2	1356 bp	65.49	3.50	93.58
SCNpilot_cont_500_bf_scaffold_35986 Species: Microbacterium azadirachtae (50%)	2	1703 bp	72.17	3.08	100.06
SCNpilot_cont_500_bf_scaffold_33899 Species: marine actinobacterium PHSC20C1 (50%)	2	1788 bp	63.59	4.47	88.59
SCNpilot_cont_500_bf_scaffold_56906 Species: Microbacterium mangrovi (50%)	2	1175 bp	69.96	4.47	91.40
SCNpilot_cont_500_bf_scaffold_49387 Species: Microbacterium laevaniformans (50%)	2	1318 bp	73.52	4.93	100.61
SCNpilot_cont_500_bf_scaffold_55828 Species: RBG_16_Chloroflexi_57_8_curated (50%)	2	1194 bp	63.57	2.93	86.43
SCNpilot_cont_500_bf_scaffold_35994 Species: Microbacterium sp. MRS-1 (50%)	2	1702 bp	66.86	3.82	88.48
SCNpilot_cont_500_bf_scaffold_63671 Species: Microbacterium laevaniformans (50%)	2	1059 bp	70.16	4.96	99.43
SCNpilot_cont_500_bf_scaffold_35741 Species: Microbacterium oleivorans (50%)	2	1713 bp	71.45	5.11	98.42
SCNpilot_cont_500_bf_scaffold_26253 Species: Microbacterium sp. MRS-1 (50%)	2	2180 bp	70.37	5.50	96.61
SCNpilot_cont_500_bf_scaffold_58345 Species: Microbacterium sp. oral taxon 186 (50%)	2	1150 bp	71.83	3.48	95.48
SCNpilot_cont_500_bf_scaffold_67100 Species: Microbacterium hominis (50%)	2	1005 bp	71.24	4.48	100.00
SCNpilot_cont_500_bf_scaffold_48508 Species: BJP_IG2157_Actinomycetales_63_19 (100%)	2	1336 bp	67.07	4.49	90.27
SCNpilot_cont_500_bf_scaffold_36337 Species: Microbacterium laevaniformans (50%)	2	1690 bp	68.11	4.44	92.49
SCNpilot_cont_500_bf_scaffold_61686 Species: Microbacterium sp. MRS-1 (100%)	2	1092 bp	70.88	3.89	87.09
SCNpilot_cont_500_bf_scaffold_60538 Species: Microbacterium sp. TS-1 (50%)	2	1112 bp	70.59	3.82	100.09
SCNpilot_cont_500_bf_scaffold_58350 Species: actinobacterium acAMD-2 (50%)	2	1150 bp	67.65	3.70	76.70
SCNpilot_cont_500_bf_scaffold_40300 Species: Microbacterium azadirachtae (50%)	2	1556 bp	69.22	5.94	88.50
SCNpilot_cont_500_bf_scaffold_47474 Species: Microbacterium hominis (50%)	2	1361 bp	67.96	4.22	88.17
SCNpilot_cont_500_bf_scaffold_35752 Species: Microbacterium laevaniformans (50%)	2	1712 bp	68.34	3.94	86.22
SCNpilot_cont_500_bf_scaffold_51452 Species: Microbacterium azadirachtae (50%)	2	1276 bp	66.54	3.53	100.16
SCNpilot_cont_500_bf_scaffold_25938 Species: Microbacterium sp. TS-1 (50%)	2	2201 bp	71.10	5.00	95.00
SCNpilot_cont_500_bf_scaffold_60547 Species: Agrococcus pavilionensis (100%)	2	1691 bp	67.36	3.84	104.14
SCNpilot_cont_500_bf_scaffold_39164 Species: Microbacterium laevaniformans (50%)	2	1591 bp	68.20	11.47	96.54
SCNpilot_cont_500_bf_scaffold_60804 Species: Microbacterium azadirachtae (50%)	2	1682 bp	69.08	3.72	89.18
SCNpilot_cont_500_bf_scaffold_37805 Species: Microbacterium sp. MRS-1 (50%)	2	1637 bp	69.76	5.65	98.23
SCNpilot_cont_500_bf_scaffold_39934 Species: Cellulomonas fimi (50%)	2	1567 bp	70.84	4.47	96.68
SCNpilot_cont_500_bf_scaffold_42193 Species: Microbacterium azadirachtae (50%)	2	1498 bp	67.76	3.50	96.13
SCNpilot_cont_500_bf_scaffold_48013 Species: Microbacterium foliorum (100%)	2	1348 bp	65.50	4.45	100.15
SCNpilot_cont_500_bf_scaffold_51205 Species: Cryobacterium sp. MLB-32 (50%)	2	1281 bp	64.64	5.46	30.21
SCNpilot_cont_500_bf_scaffold_43514 Species: Microbacterium laevaniformans (50%)	2	1463 bp	71.43	4.96	100.07
SCNpilot_cont_500_bf_scaffold_38795 Species: Microbacterium laevaniformans (50%)	2	1602 bp	68.85	4.53	100.00
SCNpilot_cont_500_bf_scaffold_54073 Species: Microbacterium laevaniformans (50%)	2	1227 bp	68.22	5.09	100.24
SCNpilot_cont_500_bf_scaffold_50395 Species: Microbacterium sp. MRS-1 (50%)	2	1298 bp	70.03	3.85	98.92

Displaying items 451-500 of 662 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_P_inoc_Microbacterium_69_20) and add all its contigs / scaffolds to the organism you choose below

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SCNpilot_P_inoc_Microbacterium_69_20

SCNPILOT_CONT_500_BF_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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