ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 4.90 Longest contig: 27.55 Kbp Bin length: 1.63 Mbp GC content: 69.79 %

Contigs count: 662 Features count: 2073 rRNAs count: 0 tRNAs count: 16

Genome completeness

partial RP 22 / 55 BSCG 28 / 51 ASCG 6 / 38 MC: 1

Displaying items 401-450 of 662 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_cont_500_bf_scaffold_50552 Species: Streptomyces himastatinicus (50%)	2	1294 bp	69.86	3.28	100.16
SCNpilot_cont_500_bf_scaffold_52443 Species: Microbacterium hominis (50%)	2	1256 bp	70.70	2.59	82.88
SCNpilot_cont_500_bf_scaffold_65668 Species: Microbacterium hominis (50%)	2	1027 bp	70.69	4.38	75.95
SCNpilot_cont_500_bf_scaffold_29657 Species: Microbacterium foliorum (50%)	2	1985 bp	73.00	5.67	100.05
SCNpilot_cont_500_bf_scaffold_35674 Species: Microbacterium laevaniformans (50%)	2	1715 bp	70.32	3.79	100.06
SCNpilot_cont_500_bf_scaffold_36778 Species: Microbacterium sp. MRS-1 (50%)	2	1674 bp	70.19	5.68	92.65
SCNpilot_cont_500_bf_scaffold_52702 Species: Microbacterium sp. oral taxon 186 (50%)	2	1252 bp	70.61	3.99	98.24
SCNpilot_cont_500_bf_scaffold_31139 Species: Leucobacter sp. UCD-THU (50%)	2	1908 bp	68.08	4.98	86.48
SCNpilot_cont_500_bf_scaffold_61617 Species: Microbacterium sp. oral taxon 186 (50%)	2	1094 bp	74.04	4.11	67.73
SCNpilot_cont_500_bf_scaffold_38453 Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)	2	1614 bp	75.46	3.87	93.31
SCNpilot_cont_500_bf_scaffold_40486 Species: Microbacterium sp. UCD-TDU (50%)	2	1550 bp	64.52	3.39	56.90
SCNpilot_cont_500_bf_scaffold_46746 Species: Microbacterium hominis (50%)	2	1380 bp	73.12	3.44	95.22
SCNpilot_cont_500_bf_scaffold_22479 Species: Microbacterium sp. oral taxon 186 (100%)	2	2453 bp	71.79	4.99	91.72
SCNpilot_cont_500_bf_scaffold_47147 Species: Microbacterium oleivorans (50%)	2	1370 bp	69.34	4.56	91.97
SCNpilot_cont_500_bf_scaffold_35680 Species: Microbacterium sp. C448 (100%)	2	1715 bp	64.66	5.25	95.51
SCNpilot_cont_500_bf_scaffold_51126 Species: Microbacterium laevaniformans (50%)	2	1282 bp	69.19	3.32	93.37
SCNpilot_cont_500_bf_scaffold_66720 Species: Microbacterium sp. SA39 (50%)	2	1011 bp	74.09	2.97	89.91
SCNpilot_cont_500_bf_scaffold_64992 Species: Microbacterium sp. MRS-1 (50%)	2	1037 bp	69.62	4.82	98.36
SCNpilot_cont_500_bf_scaffold_23773 Species: Microbacterium sp. MRS-1 (50%)	2	2351 bp	69.76	4.04	96.47
SCNpilot_cont_500_bf_scaffold_44217 Species: Microbacterium ginsengisoli (100%)	2	1444 bp	72.92	5.02	93.07
SCNpilot_cont_500_bf_scaffold_63617 Species: Streptomyces himastatinicus (50%)	2	1060 bp	73.30	4.48	87.45
SCNpilot_cont_500_bf_scaffold_15014 Species: Microbacterium sp. MRS-1 (50%)	2	3302 bp	74.26	4.09	100.03
SCNpilot_cont_500_bf_scaffold_66467 Species: Arthrobacter arilaitensis (50%)	2	1015 bp	69.85	5.67	94.29
SCNpilot_cont_500_bf_scaffold_32255 Species: Microbacterium hominis (100%)	2	1858 bp	69.38	3.50	88.48
SCNpilot_cont_500_bf_scaffold_55012 Species: Microbacterium sp. MRS-1 (50%)	2	1210 bp	68.35	3.31	87.27
SCNpilot_cont_500_bf_scaffold_27129 Species: Arthrobacter sp. PAMC25486 (50%)	2	2127 bp	70.94	4.00	90.83
SCNpilot_cont_500_bf_scaffold_51901 Species: Microbacterium maritypicum (50%)	2	1268 bp	69.64	5.91	88.96
SCNpilot_cont_500_bf_scaffold_30298 Species: Microbacterium sp. oral taxon 186 (100%)	2	1950 bp	72.72	3.72	89.54
SCNpilot_cont_500_bf_scaffold_55015 Species: Microbacterium laevaniformans (50%)	2	1210 bp	69.17	5.17	81.32
SCNpilot_cont_500_bf_scaffold_57448 Species: Microbacterium oleivorans (50%)	2	1165 bp	71.85	4.29	100.94
SCNpilot_cont_500_bf_scaffold_45186 Species: Microbacterium laevaniformans (50%)	2	1418 bp	74.54	3.88	99.65
SCNpilot_cont_500_bf_scaffold_68181 Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)	2	1800 bp	69.00	3.33	43.67
SCNpilot_cont_500_bf_scaffold_58044 Species: Microbacterium sp. MRS-1 (50%)	2	1155 bp	68.83	6.93	76.88
SCNpilot_cont_500_bf_scaffold_27138 Species: [Cellvibrio] gilvus (50%)	2	2127 bp	69.11	4.35	82.65
SCNpilot_cont_500_bf_scaffold_58814 Species: Microbacterium laevaniformans (50%)	2	1943 bp	67.99	5.02	94.03
SCNpilot_cont_500_bf_scaffold_42387 Species: Microbacterium laevaniformans (50%)	2	1493 bp	69.46	6.53	97.45
SCNpilot_cont_500_bf_scaffold_18228 Species: Microbacterium sp. CH12i (100%)	2	2867 bp	63.79	4.53	93.65
SCNpilot_cont_500_bf_scaffold_32524 Species: Microbacterium sp. oral taxon 186 (50%)	2	1846 bp	70.10	3.11	100.11
SCNpilot_cont_500_bf_scaffold_47681 Species: Microbacterium sp. UCD-TDU (50%)	2	1356 bp	69.91	4.06	83.85
SCNpilot_cont_500_bf_scaffold_66740 Species: Microbacterium hominis (50%)	2	1011 bp	66.57	3.71	100.30
SCNpilot_cont_500_bf_scaffold_65957 Species: Microbacterium sp. oral taxon 186 (50%)	2	1023 bp	72.04	3.91	96.19
SCNpilot_cont_500_bf_scaffold_63639 Species: Sanguibacter keddieii (50%)	2	1060 bp	72.08	4.72	99.34
SCNpilot_cont_500_bf_scaffold_37501 Species: Microbacterium laevaniformans (50%)	2	1648 bp	75.00	4.55	100.12
SCNpilot_cont_500_bf_scaffold_66490 Species: Microbacterium sp. C448 (100%)	2	1014 bp	66.27	3.45	90.53
SCNpilot_cont_500_bf_scaffold_41494 Species: Microbacterium testaceum (50%)	2	1519 bp	71.10	3.46	88.28
SCNpilot_cont_500_bf_scaffold_17839 Species: Microbacterium sp. oral taxon 186 (50%)	2	2912 bp	69.16	3.78	98.18
SCNpilot_cont_500_bf_scaffold_52227 Species: Microbacterium hominis (50%)	2	1261 bp	69.47	3.57	100.63
SCNpilot_cont_500_bf_scaffold_61140 Species: Microbacterium foliorum (50%)	2	1102 bp	69.60	3.63	86.84
SCNpilot_cont_500_bf_scaffold_39889 Species: Microbacterium hominis (50%)	2	1568 bp	69.52	3.99	93.94
SCNpilot_cont_500_bf_scaffold_41755 Species: Microbacterium sp. MEJ108Y (50%)	2	1512 bp	69.38	4.13	99.80

Displaying items 401-450 of 662 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_P_inoc_Microbacterium_69_20) and add all its contigs / scaffolds to the organism you choose below

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SCNpilot_P_inoc_Microbacterium_69_20

SCNPILOT_CONT_500_BF_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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