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SCNpilot_cont_500_bf_scaffold_4713

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4713_1
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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52..267
DNA (216bp) protein (72aa)
conjugal transfer protein TraI n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036C9A12
Conjugal transfer protein TrbI {ECO:0000313|EMBL:EZP81834.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_cont_500_bf_scaffold_4713_2
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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264..485
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D43EE
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_500_bf_scaffold_4713_3
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(501..809)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GQX3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB03092.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4713_4
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(903..1814)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GH79_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB03091.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_4713_5
unknown

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comp(2406..2606)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4713_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2629..3861)
DNA (1233bp) protein (411aa)
HlyD family secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI00037DBC8B rbh
HlyD family type I secretion membrane fusion protein; K12542 membrane fusion protein LapC rbh
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:ACS21205.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_4713_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3858..6116)
DNA (2259bp) protein (753aa)
Type I secretion system ATPase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL55_VARPS rbh
type I secretion system ATPase; K12541 ATP-binding cassette, subfamily C, bacterial LapB rbh
Type I secretion system ATPase {ECO:0000313|EMBL:ACS21206.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_4713_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6113..7513)
DNA (1401bp) protein (467aa)
Putative type I secretion outer membrane protein, TolC family n=1 Tax=Variovorax paradoxus B4 RepID=T1XGX9_VARPD rbh
putative type I secretion outer membrane protein, TolC family rbh
Putative type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:AGU51776.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_500_bf_scaffold_4713_9
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7645..8034)
DNA (390bp) protein (130aa)
Contig18, whole genome shotgun sequence {ECO:0000313|EMBL:KID12365.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
Displaying 9 items

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