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SCNpilot_cont_500_bf_scaffold_4822

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4822_1
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1..942)
DNA (942bp) protein (314aa)
RagB/SusD family protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G6S1_ECHVK
RagB/SusD family protein
RagB/SusD family protein {ECO:0000313|EMBL:AGA80530.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
SCNpilot_cont_500_bf_scaffold_4822_2
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(960..2768)
DNA (1809bp) protein (603aa)
TonB-dependent receptor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XTJ2_PEDHD
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ACU05770.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_cont_500_bf_scaffold_4822_3
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2723..4150)
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00035DA461
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ACU05770.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_cont_500_bf_scaffold_4822_4
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4336..5082)
DNA (747bp) protein (249aa)
Transcriptional regulator n=3 Tax=Alistipes RepID=I3YKW7_ALIFI
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AFL77635.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
SCNpilot_cont_500_bf_scaffold_4822_5
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5427..6962)
DNA (1536bp) protein (512aa)
General substrate transporter n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIN2_NIAKG rbh
MFS transporter {ECO:0000313|EMBL:KIC92187.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
general substrate transporter rbh
SCNpilot_cont_500_bf_scaffold_4822_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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7232..9163
DNA (1932bp) protein (644aa)
acetyl-coenzyme A synthetase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] rbh
Acetyl-coenzyme A synthetase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIN3_NIAKG rbh
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_cont_500_bf_scaffold_4822_7
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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9546..11576
DNA (2031bp) protein (677aa)
Legume lectin beta domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PET4_CHIPD rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO41795.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
legume lectin beta domain-containing protein rbh
SCNpilot_cont_500_bf_scaffold_4822_8
unknown

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11761..12213
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4822_9
Chlorobium chlorochromatii, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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12845..13171
DNA (327bp) protein (109aa)
Transcriptional regulator, XRE family n=1 Tax=Chlorobium chlorochromatii (strain CaD3) RepID=Q3AS47_CHLCH
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABB28178.1}; TaxID=340177 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium chlorochromatii (strain CaD3).;"
SCNpilot_cont_500_bf_scaffold_4822_10
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13449..13985
DNA (537bp) protein (179aa)
Cyclic nucleotide-binding n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XT05_PEDHD
cyclic nucleotide-binding protein
Cyclic nucleotide-binding {ECO:0000313|EMBL:ACU03566.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_cont_500_bf_scaffold_4822_11
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14054..14407
DNA (354bp) protein (118aa)
Putative uncharacterized protein id=1845125 bin=GWD2_Bacteroidetes_40_43 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein
Tax=GWE2_Bacteroidetes_40_63_curated
Displaying 11 items

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