ggKbase home page

SCNpilot_cont_500_bf_scaffold_22007

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_22007_1
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3..1154)
DNA (1152bp) protein (384aa)
SusC/RagA family TonB-linked outer membrane protein n=2 Tax=Parabacteroides RepID=N2AXU3_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EOS18498.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
TonB-dependent transducer
SCNpilot_cont_500_bf_scaffold_22007_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1408..2472)
DNA (1065bp) protein (355aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8X6_NIAKG
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEW02333.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_500_bf_scaffold_22007_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2605..3267)
DNA (663bp) protein (221aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8X7_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW02334.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_500_bf_scaffold_22007_4
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3268..3564)
DNA (297bp) protein (99aa)
Endo-beta-galactosidase n=1 Tax=Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 RepID=R9CJY7_ELIME
Endo-beta-galactosidase {ECO:0000313|EMBL:EOR29315.1}; TaxID=1216967 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535.;"
glycosyl hydrolase family 16
SCNpilot_cont_500_bf_scaffold_22007_5
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3566..4024)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K5YK40_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN14127.1}; TaxID=999418 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
endo-beta-galactosidase
SCNpilot_cont_500_bf_scaffold_22007_6
Nematostella vectensis, Nematostella, Actiniaria, Hexacorallia, Cnidaria, Metazoa

Not on your lists

comp(4221..5033)
DNA (813bp) protein (271aa)
Predicted protein n=1 Tax=Nematostella vectensis RepID=A8DW42_NEMVE rbh
hypothetical protein rbh
Predicted protein {ECO:0000313|EMBL:EDO25567.1}; TaxID=45351 species="Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella.;" source="Nematostella vectensis (Starlet sea anemone).;"
SCNpilot_cont_500_bf_scaffold_22007_7
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5141..5881)
DNA (741bp) protein (247aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QTM7_SPILD
type I phosphodiesterase/nucleotide pyrophosphatase
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:ADB42159.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
Displaying 7 items

View Taxonomy