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SCNpilot_cont_500_bf_scaffold_6854_6

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: comp(6483..7238)

Top 3 Functional Annotations

Value Algorithm Source
Helix-turn-helix-domain containing protein AraC type n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XSE9_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 72.2
  • Coverage: 252.0
  • Bit_score: 374
  • Evalue 6.20e-101
  • rbh
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 72.2
  • Coverage: 252.0
  • Bit_score: 374
  • Evalue 2.00e-101
  • rbh
Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ACU03494.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.2
  • Coverage: 252.0
  • Bit_score: 374
  • Evalue 8.80e-101

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Taxonomy

Pedobacter heparinus → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 756
ATGGACAATAACCTGGAATATAAAATCATTAAGCCCGGCAAACCGCTTTCGGACTTTGTAGAAAGCTTCTGGTTCTTACGCAATCATTCCGGCAGCGATAAAGAAACGACAGGATTGCCCGACGGGCTCATTGATGTATTGCTTTCCAAAGCAGCCGCAGCGCCTTTTCGTATCGTACAGCTTGGAGGATTGACGCAACACGAGCAGGCGACACTGCCCGCGGGCTGTGTAATATTTTGCATCAGCTTTAAATTGCTTGCCGTAGAATATATTTTTCGTGAACCTATTGCAAACATTCTTAACAGCGGGAAGCTTTTGCCTGATGATTTTTGGGATTTTAACGAAAATGACCTGGACAGCTTTGATCTTTTCTGCAAAAAAGCTTCACAGAAAATACAATCGCTTTTGCCCGAAGCAATTGACGAAAGAAAACGGAAACTTTTTGAACTGATCTACGCTGCCAGCGGAGCCATTACCGTAAAAGAGCTTTCCGAAAAAGTGTTCTGGAGCAGCCGGCAGATCAACCGTTATTTCAACCAGCAATTCGGCATTTCATTAAAGGCATATTGCAATATCCTTCGTTTTCGCGCCTCGCTGGAACATATCGCACAGGGAAAACTTTTTCCCGAAGAAAACTTTTCCGACCAAACGCACTTCATCAAAGAAGTTAAAAAGTTTGCCGGCGTGGCGCCGAAAGAATTATCCAAAAACAAAAACGACCGATTTATACTATTATCGGCAATAAAGCGGAAATAA
PROTEIN sequence
Length: 252
MDNNLEYKIIKPGKPLSDFVESFWFLRNHSGSDKETTGLPDGLIDVLLSKAAAAPFRIVQLGGLTQHEQATLPAGCVIFCISFKLLAVEYIFREPIANILNSGKLLPDDFWDFNENDLDSFDLFCKKASQKIQSLLPEAIDERKRKLFELIYAASGAITVKELSEKVFWSSRQINRYFNQQFGISLKAYCNILRFRASLEHIAQGKLFPEENFSDQTHFIKEVKKFAGVAPKELSKNKNDRFILLSAIKRK*