ggKbase home page

SCNpilot_cont_500_bf_scaffold_6854

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_6854_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..3179
DNA (3177bp) protein (1059aa)
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PS12_CHIPD rbh
hydrophobe/amphiphile efflux-1 (HAE1) family transporter rbh
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family {ECO:0000313|EMBL:ACU60806.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_500_bf_scaffold_6854_2
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3231..4139
DNA (909bp) protein (303aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GBI2_9BACT
RND transporter {ECO:0000313|EMBL:AKD58484.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
NodT family RND efflux system outer membrane lipoprotein
SCNpilot_cont_500_bf_scaffold_6854_3
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

4157..4648
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI00036CE859
NodT family RND efflux system outer membrane lipoprotein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_cont_500_bf_scaffold_6854_4
Ignavibacterium album, Ignavibacterium, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(5082..5333)
DNA (252bp) protein (84aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=945713 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Ignavibacteriaceae; Ignavibacterium.;" source="Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 /; Mat9-16).;"
Superfamily I DNA/RNA helicase n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0APJ5_IGNAJ
Superfamily I DNA/RNA helicase
SCNpilot_cont_500_bf_scaffold_6854_5
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5367..6452)
DNA (1086bp) protein (362aa)
Monooxygenase FAD-binding n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XSE8_PEDHD rbh
FAD-binding monooxygenase rbh
Monooxygenase FAD-binding {ECO:0000313|EMBL:ACU03493.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_cont_500_bf_scaffold_6854_6
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6483..7238)
DNA (756bp) protein (252aa)
Helix-turn-helix-domain containing protein AraC type n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XSE9_PEDHD rbh
AraC family transcriptional regulator rbh
Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ACU03494.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_cont_500_bf_scaffold_6854_7
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(7393..8136)
DNA (744bp) protein (248aa)
Putative rifampin ADP-ribosyl transferase n=2 Tax=Oscillatoria RepID=D7F1B1_9CYAN rbh
Putative rifampin ADP-ribosyl transferase {ECO:0000313|EMBL:ADI48273.1}; Rifampin ADP-ribosyl transferase (Modular protein) {ECO:0000313|EMBL:CBN58615.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
rifampin ADP-ribosyl transferase rbh
SCNpilot_cont_500_bf_scaffold_6854_8
unknown

Not on your lists

comp(8136..8276)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_6854_9
unknown

Not on your lists

comp(8631..9167)
DNA (537bp) protein (179aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_6854_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9352..10419)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TRR4_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02211.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_500_bf_scaffold_6854_11
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10635..11195)
DNA (561bp) protein (187aa)
Uncharacterized protein {ECO:0000313|EMBL:AHM59119.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
SCNpilot_cont_500_bf_scaffold_6854_12
Algibacter lectus, Algibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11414..11989)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MNF3_9SPHI
Ankyrin repeats containing protein {ECO:0000313|EMBL:GAL60621.1}; TaxID=221126 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Algibacter.;" source="Algibacter lectus.;"
Suppressor of fused protein (SUFU)
Displaying 12 items

View Taxonomy