ggKbase home page

SCNpilot_cont_500_bf_scaffold_19335_4

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: 2795..3661

Top 3 Functional Annotations

Value Algorithm Source
Putative lipopolysaccharide biosynthesis protein n=1 Tax=Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) RepID=A4CKC4_ROBBH similarity UNIREF
DB: UNIREF100
  • Identity: 41.2
  • Coverage: 284.0
  • Bit_score: 215
  • Evalue 7.30e-53
lipopolysaccharide biosynthesis protein similarity KEGG
DB: KEGG
  • Identity: 41.2
  • Coverage: 284.0
  • Bit_score: 215
  • Evalue 2.30e-53
Putative lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:EAR15323.1}; TaxID=313596 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Robiginitalea.;" source="Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 41.2
  • Coverage: 284.0
  • Bit_score: 215
  • Evalue 1.00e-52

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Robiginitalea biformata → Robiginitalea → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 867
GTGTTTAAAGCAGCTAAATATTTTGACAAGTACGATATTGTTCATGTTCATCTTTTCCCCGCTATATACTGGACATCCCTTGCCAAGATAATAAGACCTGCTAACCGGAAAGCAAAATATGTTTTGACTGAACACAGCAATTCCAACAGGCGGTTTACCAAACCCTATTTACAGCCGGTGGACAAATTCATATACGACAGGTTTGATGCCCTGATCGCGATAAGTGAAAGCGTGAAAGAGGTATTATGGAACAGGATAGGGCACCCCGATATTCCTGTGATATATAACGGTGTCAATGTTAAAGAACTGTCTGAGGCTGTGCCGGTACCGCTTCCCGAAAACCAGGTTTCCTTATTAATGGTGGCAGCGTTCAGCGATGCAAAAGACCAGGATACGGTGATAAAGGCCATGCAGCACCTCGACGATCGCTATCATTTATATTTTGCCGGGCAGGGGTATACCGAGAAAGAATGTATGCAACTGGCCCGGGACCTGAATGTGGCGCATCGTGTACATTTTATGGGAGTAAGGAAGGATATCCCGGGACTTATGAAATCTGTTGATATCAATATCCTCTCCAGCCATTGGGAGGGTTTATCCTGTGTGGCACTGGAAGCAATGGCTTCCGGCACGCCCTTCCTTGGTACAGATGTCAATGGCATCAAAGAAATGTTTTCGAACAATGAGTACGCATTGTTTAAAACAGGTGACGTGGAAGCATTAACCCAAAAAATTAAAAAAATAGCTGACGATAAGTCTTTTGCGAAGCAGCAGTCCGAGATAAATTTTAAAGAAGTTCAAAAATTCGATATTGAAGTGATGACTGATCATTACCTGGAGTTATATAAGCGACTTCTTCAATCTTAA
PROTEIN sequence
Length: 289
VFKAAKYFDKYDIVHVHLFPAIYWTSLAKIIRPANRKAKYVLTEHSNSNRRFTKPYLQPVDKFIYDRFDALIAISESVKEVLWNRIGHPDIPVIYNGVNVKELSEAVPVPLPENQVSLLMVAAFSDAKDQDTVIKAMQHLDDRYHLYFAGQGYTEKECMQLARDLNVAHRVHFMGVRKDIPGLMKSVDINILSSHWEGLSCVALEAMASGTPFLGTDVNGIKEMFSNNEYALFKTGDVEALTQKIKKIADDKSFAKQQSEINFKEVQKFDIEVMTDHYLELYKRLLQS*