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SCNpilot_cont_500_bf_scaffold_19335

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_19335_1
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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1..1308
DNA (1308bp) protein (436aa)
epsB; capsular exopolysaccharide family (EC:2.7.10.2)
Capsular exopolysaccharide family {ECO:0000313|EMBL:CCG98809.1}; EC=2.7.10.2 {ECO:0000313|EMBL:CCG98809.1};; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
Capsular exopolysaccharide family n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0K3V6_9BACT
SCNpilot_cont_500_bf_scaffold_19335_2
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1374..2630
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZI73_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ17075.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
SCNpilot_cont_500_bf_scaffold_19335_3
unknown

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2652..2765
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_19335_4
Robiginitalea biformata, Robiginitalea, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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2795..3661
DNA (867bp) protein (289aa)
Putative lipopolysaccharide biosynthesis protein n=1 Tax=Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) RepID=A4CKC4_ROBBH
lipopolysaccharide biosynthesis protein
Putative lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:EAR15323.1}; TaxID=313596 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Robiginitalea.;" source="Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146).;"
SCNpilot_cont_500_bf_scaffold_19335_5
Lacinutrix sp. 5H-3-7-4, Lacinutrix, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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3686..4744
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Lacinutrix sp. (strain 5H-3-7-4) RepID=F6GG50_LACS5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEH00887.1}; TaxID=983544 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Lacinutrix.;" source="Lacinutrix sp. (strain 5H-3-7-4).;"
SCNpilot_cont_500_bf_scaffold_19335_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4749..5222
DNA (474bp) protein (158aa)
ribosomal RNA large subunit methyltransferase H; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreen
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9R6_NIAKG
SCNpilot_cont_500_bf_scaffold_19335_7
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5281..5487
DNA (207bp) protein (69aa)
membrane protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B4634
Peptidase S54 famiy protein {ECO:0000313|EMBL:GAO43685.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
rhomboid family protein
SCNpilot_cont_500_bf_scaffold_19335_8
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5490..5858
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037AD212
Uncharacterized protein {ECO:0000313|EMBL:KIC93335.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
rhomboid family protein
SCNpilot_cont_500_bf_scaffold_19335_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5855..6901)
DNA (1047bp) protein (349aa)
tRNA(Ile)-lysidine synthase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
tRNA(Ile)-lysidine synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDG3_NIAKG
SCNpilot_cont_500_bf_scaffold_19335_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6855..7163)
DNA (309bp) protein (103aa)
tRNA(Ile)-lysidine synthase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
tRNA(Ile)-lysidine synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDG3_NIAKG
SCNpilot_cont_500_bf_scaffold_19335_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(7185..7499)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000361A0EF
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_cont_500_bf_scaffold_19335_12
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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7564..7890
DNA (327bp) protein (109aa)
Electron transfer flavoprotein beta subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDG5_NIAKG
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:KIC91962.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit
Displaying 12 items

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