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SCNpilot_cont_500_bf_scaffold_29947_4

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Location: comp(915..1235)

Top 3 Functional Annotations

Value Algorithm Source
sigma-70 family RNA polymerase sigma factor n=1 Tax=Spirosoma luteum RepID=UPI00036D239F similarity UNIREF
DB: UNIREF100
  • Identity: 53.5
  • Coverage: 99.0
  • Bit_score: 116
  • Evalue 1.30e-23
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:KIA92810.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.1
  • Coverage: 93.0
  • Bit_score: 112
  • Evalue 4.50e-22
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 46.5
  • Coverage: 99.0
  • Bit_score: 104
  • Evalue 1.60e-20

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Taxonomy

Pedobacter kyungheensis → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 321
ATGCAAAAAGCCACGCAGCACAATATTATTTCAGTAGTCAGGGATTATGGCGGCAAGCTGTTCAATTTCATTCGTGGCAGGGTAGGGAGCAATGAGGATGCAGAAGACATTATGCAGGATATCTGGTACCAGGTAAGCAATATAATAGACATCAATGAAATAGAAAGCATGAGCGGCTGGCTCTTCAGGGTAGCGCGGAATAAGATCACAGACAGGTATCGCAAAAAGAAAGATCTGCTGGCAGAAGATATTTTGCCAGAGGGGTATGAAAGTGGCGAAAGGCTCCCTGACCTCTTTTCAGTTGTGGATGACAGCGCGTAA
PROTEIN sequence
Length: 107
MQKATQHNIISVVRDYGGKLFNFIRGRVGSNEDAEDIMQDIWYQVSNIIDINEIESMSGWLFRVARNKITDRYRKKKDLLAEDILPEGYESGERLPDLFSVVDDSA*