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SCNPILOT_EXPT_1000_BF_Niastella_43_130

SCNPILOT_CONT_500_BF_Sphingobacteriales_44_5
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 4.59 Longest contig: 15.31 Kbp Bin length: 4.21 Mbp GC content: 43.62 %
Contigs count: 1379 Features count: 4754 rRNAs count: 0 tRNAs count: 18

Genome completeness

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 4 ASCG 10 / 38 MC: 1
Displaying items 201-250 of 1379 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_41160
Species: Aequorivita sublithincola (100%)
2 1531 bp 47.49 3.27 90.53
SCNpilot_cont_500_bf_scaffold_58748
Species: Niastella koreensis (50%)
2 1143 bp 44.71 4.81 91.86
SCNpilot_cont_500_bf_scaffold_24953
Species: Pontibacter sp. BAB1700 (50%)
2 2267 bp 49.49 4.52 60.87
SCNpilot_cont_500_bf_scaffold_22433
Species: Fibrella aestuarina (50%)
2 2458 bp 47.11 4.68 94.59
SCNpilot_cont_500_bf_scaffold_14770
Species: Pontibacter korlensis (50%)
2 3341 bp 46.12 4.86 93.03
SCNpilot_cont_500_bf_scaffold_30498
Species: RBG_13_Bacteroidetes_42_15_curated (50%)
2 1940 bp 46.91 3.22 97.11
SCNpilot_cont_500_bf_scaffold_36994
Species: Rhodonellum psychrophilum (50%)
2 1667 bp 48.23 2.70 95.92
SCNpilot_cont_500_bf_scaffold_12650
Species: Cyclobacterium marinum (50%)
2 3755 bp 41.76 4.99 92.20
SCNpilot_cont_500_bf_scaffold_13531
Species: Cyclobacterium marinum (50%)
2 3576 bp 46.81 5.38 96.56
SCNpilot_cont_500_bf_scaffold_28524
Species: Chitinophaga pinensis (50%)
2 2044 bp 42.91 3.79 77.94
SCNpilot_cont_500_bf_scaffold_19604
Species: Dyadobacter fermentans (50%)
2 2714 bp 40.46 4.61 84.01
SCNpilot_cont_500_bf_scaffold_46448
Species: Rhodonellum psychrophilum (50%)
2 1387 bp 44.27 4.15 99.06
SCNpilot_cont_500_bf_scaffold_42069
Species: Bacteroides xylanisolvens (50%)
2 1502 bp 44.87 3.66 92.88
SCNpilot_cont_500_bf_scaffold_27845
Species: Niastella koreensis (50%)
2 2084 bp 43.19 3.72 80.18
SCNpilot_cont_500_bf_scaffold_50777
Species: Niabella soli (100%)
2 1289 bp 39.26 4.65 90.07
SCNpilot_cont_500_bf_scaffold_66163
Species: Solitalea canadensis (50%)
2 1020 bp 43.73 3.43 83.24
SCNpilot_cont_500_bf_scaffold_59884
Species: RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated (50%)
2 1123 bp 39.00 5.34 45.15
SCNpilot_cont_500_bf_scaffold_57396
Species: Pedobacter sp. V48 (50%)
2 1166 bp 46.23 4.29 89.54
SCNpilot_cont_500_bf_scaffold_32976
Species: Arcticibacter svalbardensis (50%)
2 1826 bp 45.51 5.89 92.99
SCNpilot_cont_500_bf_scaffold_60944
Species: Mucilaginibacter paludis (50%)
2 1105 bp 47.87 5.43 92.85
SCNpilot_cont_500_bf_scaffold_50012
Species: Chitinophaga pinensis (50%)
2 1305 bp 40.38 4.60 77.70
SCNpilot_cont_500_bf_scaffold_25313
Species: Sphingobacterium sp. PM2-P1-29 (50%)
2 2241 bp 44.22 3.90 99.06
SCNpilot_cont_500_bf_scaffold_53742
Species: Spirosoma linguale (50%)
2 1233 bp 46.88 3.65 99.51
SCNpilot_cont_500_bf_scaffold_21498
Species: Emticicia oligotrophica (50%)
2 2542 bp 44.22 5.11 97.13
SCNpilot_cont_500_bf_scaffold_38419
Species: Pedobacter antarcticus (50%)
2 1615 bp 39.20 7.12 80.25
SCNpilot_cont_500_bf_scaffold_26669
Species: Pedobacter heparinus (50%)
2 2157 bp 47.29 4.52 96.24
SCNpilot_cont_500_bf_scaffold_42591
Species: Cyclobacteriaceae bacterium AK24 (50%)
2 1487 bp 45.12 3.03 85.14
SCNpilot_cont_500_bf_scaffold_28792
Species: Niabella soli (100%)
2 3356 bp 43.50 3.43 98.96
SCNpilot_cont_500_bf_scaffold_18689
Species: Parabacteroides sp. HGS0025 (50%)
2 2816 bp 47.66 3.91 96.09
SCNpilot_cont_500_bf_scaffold_26163
Species: Niastella koreensis (50%)
2 2187 bp 46.64 4.34 96.02
SCNpilot_cont_500_bf_scaffold_63327
Species: Niastella koreensis (100%)
2 1065 bp 46.38 4.23 99.72
SCNpilot_cont_500_bf_scaffold_47887 2 1351 bp 38.27 5.55 96.15
SCNpilot_cont_500_bf_scaffold_34044
Species: Flavihumibacter sp. ZG627 (50%)
2 1781 bp 46.72 3.51 96.69
SCNpilot_cont_500_bf_scaffold_35909
Species: Niastella koreensis (50%)
2 1705 bp 46.16 4.11 99.24
SCNpilot_cont_500_bf_scaffold_64961
Species: Niabella soli (50%)
2 1038 bp 47.98 4.34 90.17
SCNpilot_cont_500_bf_scaffold_28542
Species: Niastella koreensis (50%)
2 2044 bp 47.06 5.50 95.99
SCNpilot_cont_500_bf_scaffold_41182
Species: Cecembia lonarensis (50%)
2 1530 bp 39.80 5.39 88.24
SCNpilot_cont_500_bf_scaffold_60190
Species: Niastella koreensis (100%)
2 1118 bp 45.89 5.59 79.70
SCNpilot_cont_500_bf_scaffold_55490
Species: Solitalea canadensis (50%)
2 1201 bp 42.05 3.75 74.19
SCNpilot_cont_500_bf_scaffold_11391
Species: Flammeovirgaceae bacterium 311 (50%)
2 4050 bp 38.49 4.44 95.85
SCNpilot_cont_500_bf_scaffold_40207
Species: Spirosoma linguale (100%)
2 1559 bp 49.52 3.69 91.02
SCNpilot_cont_500_bf_scaffold_23487
Species: Niastella koreensis (50%)
2 2372 bp 43.63 4.53 87.77
SCNpilot_cont_500_bf_scaffold_9848
Species: marine sediment metagenome (100%)
2 4505 bp 41.02 4.22 99.76
SCNpilot_cont_500_bf_scaffold_40720
Species: Niabella soli (100%)
2 1543 bp 46.01 3.56 97.41
SCNpilot_cont_500_bf_scaffold_14281
Species: Niastella koreensis (50%)
2 3429 bp 46.75 4.59 96.06
SCNpilot_cont_500_bf_scaffold_16729
Species: Niastella koreensis (50%)
2 3051 bp 47.59 3.93 78.27
SCNpilot_cont_500_bf_scaffold_32738
Species: Mucilaginibacter paludis (50%)
2 1837 bp 44.58 4.90 89.98
SCNpilot_cont_500_bf_scaffold_44702
Species: Chitinophaga pinensis (50%)
2 1431 bp 45.14 4.02 92.03
SCNpilot_cont_500_bf_scaffold_48680
Species: Niabella soli (100%)
2 1332 bp 43.84 3.94 101.35
SCNpilot_cont_500_bf_scaffold_44963
Species: Runella slithyformis (50%)
2 1424 bp 46.35 3.16 92.70
Displaying items 201-250 of 1379 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.