ggKbase home page

SCNpilot_cont_500_bf_scaffold_4628

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4628_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1964)
DNA (1962bp) protein (654aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
phenylalanyl-tRNA synthetase beta chain; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBQ4_PELHB
SCNpilot_cont_500_bf_scaffold_4628_2
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1961..2614)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Serinicoccus marinus RepID=UPI0003B52AA1
Glycerol-3-phosphate ABC transporter, permease pro tein UgpE {ECO:0000313|EMBL:CDP50532.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4628_3
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2611..3015)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000363C07A
ASCH domain-containing protein {ECO:0000313|EMBL:KJV11014.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
FIG00741848: hypothetical protein
SCNpilot_cont_500_bf_scaffold_4628_4
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3015..4145)
DNA (1131bp) protein (377aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
phenylalanyl-tRNA synthetase alpha chain; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] rbh
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBQ6_PELHB rbh
SCNpilot_cont_500_bf_scaffold_4628_5
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4364..4765)
DNA (402bp) protein (134aa)
50S ribosomal protein L20 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBQ7_PELHB
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
SCNpilot_cont_500_bf_scaffold_4628_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4779..4979)
DNA (201bp) protein (67aa)
50S ribosomal protein L35 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBQ8_PELHB
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
SCNpilot_cont_500_bf_scaffold_4628_7
unknown

Not on your lists

5192..5356
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4628_8
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5353..5775)
DNA (423bp) protein (141aa)
Transcriptional regulator, MarR family id=2735428 bin=GWF1_Rhodobacteraceae_65_7 species=Polymorphum gilvum genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
transcriptional regulator
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_cont_500_bf_scaffold_4628_9
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5857..6639)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. SJ98 RepID=K8RR35_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKS72501.1}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ98.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4628_10
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6744..7640)
DNA (897bp) protein (299aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VWF4_9RHIZ rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EJZ21795.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_4628_11
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7745..8200
DNA (456bp) protein (152aa)
Putative dinucleotide-binding enzyme n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0KMC4_RHILT
Oxidoreductase {ECO:0000313|EMBL:KFL32382.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
coenzyme F420-dependent NADP oxidoreductase; K06988
SCNpilot_cont_500_bf_scaffold_4628_12
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8900..9424)
DNA (525bp) protein (175aa)
Translation initiation factor IF-3 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBP6_PELHB
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
translation initiation factor 3; K02520 translation initiation factor IF-3
SCNpilot_cont_500_bf_scaffold_4628_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9606..10424
DNA (819bp) protein (273aa)
2-hydroxymuconic semialdehyde hydrolase {ECO:0000313|EMBL:CDP50520.1}; EC=3.1.1.- {ECO:0000313|EMBL:CDP50520.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
2-hydroxymuconic semialdehyde hydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBP7_PELHB rbh
2-hydroxymuconic semialdehyde hydrolase rbh
SCNpilot_cont_500_bf_scaffold_4628_14
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10470..10808
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6UYW9_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:GAB88663.1}; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4628_15
bacterium YEK0313, Bacteria

Not on your lists

comp(10950..11252)
DNA (303bp) protein (101aa)
Putative acetyltransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=F2VS67_RHITR
Amino-acid acetyltransferase {ECO:0000313|EMBL:CEJ15132.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative acetyltransferase, GNAT family
Displaying 15 items

View Taxonomy