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SCNpilot_cont_500_bf_scaffold_4943

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4943_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..271)
DNA (270bp) protein (90aa)
deoxyribose-phosphate aldolase; K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
Deoxyribose-phosphate aldolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFQ9_PELHB
Deoxyribose-phosphate aldolase {ECO:0000313|EMBL:KKB13156.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_cont_500_bf_scaffold_4943_2
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(331..738)
DNA (408bp) protein (136aa)
cdd; cytidine deaminase (EC:3.5.4.5); K01489 cytidine deaminase [EC:3.5.4.5]
Cytidine deaminase (Cytidine aminohydrolase) n=2 Tax=Methylobacterium extorquens RepID=C5AWR3_METEA
Cytidine deaminase {ECO:0000313|EMBL:KFC61327.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_cont_500_bf_scaffold_4943_3
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(738..1082)
DNA (345bp) protein (115aa)
Sugar ABC transporter, permease protein n=2 Tax=Pseudovibrio RepID=G8PSC5_PSEUV
Sugar ABC transporter permease {ECO:0000313|EMBL:KKC38182.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
sugar ABC transporter permease; K02057 simple sugar transport system permease protein
SCNpilot_cont_500_bf_scaffold_4943_4
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1185..1658
DNA (474bp) protein (158aa)
Deoxyribose-phosphate aldolase {ECO:0000256|SAAS:SAAS00058202}; EC=4.1.2.4 {ECO:0000256|SAAS:SAAS00058202};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
deoxyribose-phosphate aldolase; K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
Deoxyribose-phosphate aldolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFQ9_PELHB
SCNpilot_cont_500_bf_scaffold_4943_5
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1658..1960
DNA (303bp) protein (101aa)
Ypar18 n=1 Tax=Pseudomonas alcaligenes RepID=Q939F5_PSEAC
Ypar18 {ECO:0000313|EMBL:AAK73303.1}; TaxID=43263 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes.;"
SCNpilot_cont_500_bf_scaffold_4943_6
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1977..3767
DNA (1791bp) protein (597aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFR0_PELHB
Aldehyde dehydrogenase {ECO:0000313|EMBL:KFL26540.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_cont_500_bf_scaffold_4943_7
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3712..4254
DNA (543bp) protein (181aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFR0_PELHB
Aldehyde dehydrogenase {ECO:0000313|EMBL:KKB76725.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_cont_500_bf_scaffold_4943_8
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4337..4879
DNA (543bp) protein (181aa)
Heme oxygenase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PHF1_9RHIZ
Heme oxygenase {ECO:0000313|EMBL:EKF60258.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
heme oxygenase; K07215 heme oxygenase
SCNpilot_cont_500_bf_scaffold_4943_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4879..7434
DNA (2556bp) protein (852aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI0003625180 rbh
Strain MEJ076 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ02717.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
bacteriophytochrome protein rbh
SCNpilot_cont_500_bf_scaffold_4943_10
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7423..8454)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2I892_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKB85803.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_cont_500_bf_scaffold_4943_11
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8500..9759)
DNA (1260bp) protein (420aa)
Secretion protein n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LRJ8_DINSH
Uncharacterized protein {ECO:0000313|EMBL:KKB85860.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
secretion protein
SCNpilot_cont_500_bf_scaffold_4943_12
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9876..10364
DNA (489bp) protein (163aa)
Transcriptional regulator n=1 Tax=Streptomyces rimosus subsp. rimosus ATCC 10970 RepID=L8EGQ6_STRRM
Uncharacterized protein {ECO:0000313|EMBL:KKB77847.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
MarR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_4943_13
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10478..11323
DNA (846bp) protein (282aa)
Permease n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EK63_9RHOB rbh
Permease {ECO:0000313|EMBL:ESW60619.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
permease, DMT superfamily
Displaying 13 items

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