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SCNpilot_cont_500_bf_scaffold_5060

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5060_1
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..293)
DNA (291bp) protein (97aa)
GntR-family transcriptional regulator n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2K2_POLGS
GntR family transcriptional regulator
GntR-family transcriptional regulator {ECO:0000313|EMBL:ADZ70916.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_5060_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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462..1679
DNA (1218bp) protein (406aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
mannonate dehydratase; K01686 mannonate dehydratase [EC:4.2.1.8] rbh
D-mannonate dehydratase n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9QQU8_9RHOB rbh
SCNpilot_cont_500_bf_scaffold_5060_3
Paenibacillus sp. JDR-2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1679..2410
DNA (732bp) protein (244aa)
Oxidoreductase domain protein n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6CXI4_PAESJ
oxidoreductase
Oxidoreductase domain protein {ECO:0000313|EMBL:ACT00398.1}; TaxID=324057 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. (strain JDR-2).;"
SCNpilot_cont_500_bf_scaffold_5060_4
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

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2364..2690
DNA (327bp) protein (109aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXP3_9BACL
Putative dehydrogenase {ECO:0000313|EMBL:AIE84596.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
oxidoreductase
SCNpilot_cont_500_bf_scaffold_5060_5
unknown

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comp(2827..3342)
DNA (516bp) protein (172aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5060_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3343..4485)
DNA (1143bp) protein (381aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I2_PELHB rbh
Succinylglutamate desuccinylase {ECO:0000313|EMBL:KKB11913.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
succinylglutamate desuccinylase/aspartoacylase; K06987 rbh
SCNpilot_cont_500_bf_scaffold_5060_7
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4498..5241)
DNA (744bp) protein (248aa)
Histidine ABC transporter, permease protein HisM n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I1_PELHB rbh
Histidine ABC transporter, permease protein HisM {ECO:0000313|EMBL:CDP50341.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
histidine ABC transporter permease HisM; K02029 polar amino acid transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_5060_8
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5238..6092)
DNA (855bp) protein (285aa)
ABC transporter, permease protein, HisMQ family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I0_PELHB rbh
ABC transporter permease {ECO:0000313|EMBL:KKB11935.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ABC transporter permease, HisMQ family; K02029 polar amino acid transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_5060_9
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6143..6904)
DNA (762bp) protein (254aa)
His/Glu/Gln/Arg/opine family ABC transporter, periplasmic His/Glu/Gln/Arg/opine family-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H9_PELHB
Amino acid ABC transporter {ECO:0000313|EMBL:KKB77219.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
His/Glu/Gln/Arg/opine family ABC transporter substrate-binding protein; K02030 polar amino acid transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_5060_10
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7082..7864)
DNA (783bp) protein (261aa)
histidine ABC transporter ATP-binding protein HisP; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21] rbh
Histidine ABC transporter, ATP-binding protein HisP n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H8_PELHB rbh
Amino acid transporter {ECO:0000313|EMBL:KKB84294.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_cont_500_bf_scaffold_5060_11
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8044..8244
DNA (201bp) protein (67aa)
CsbD-like protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C0Y5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGD94973.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5060_12
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8378..8743)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000370D348
Uncharacterized protein {ECO:0000313|EMBL:CDP51377.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5060_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8958..9122)
DNA (165bp) protein (55aa)
UPF0391 membrane protein NGR_c03580 n=2 Tax=Rhizobium fredii RepID=C3MGP0_RHISN
UPF0391 membrane protein JP75_14630 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5060_14
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9286..9729)
DNA (444bp) protein (148aa)
chemotaxis protein CheY n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000376A26A
Two-component response regulator {ECO:0000313|EMBL:KKB07320.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
two-component response regulator
Displaying 14 items

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