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SCNpilot_cont_500_bf_scaffold_5311

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5311_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1239
DNA (1239bp) protein (413aa)
long-chain-fatty-acid--CoA ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Long-chain-fatty-acid--CoA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA08_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10951.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_cont_500_bf_scaffold_5311_2
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1226..1615
DNA (390bp) protein (130aa)
Putative transcriptional regulator LiuR of leucine degradation pathway, MerR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA09_PELHB
MerR family transcriptional regulator {ECO:0000313|EMBL:KKB10950.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative transcriptional regulator LiuR of leucine degradation pathway, MerR family
SCNpilot_cont_500_bf_scaffold_5311_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1781..2038)
DNA (258bp) protein (86aa)
excinuclease ABC subunit B n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B3FB0A
Uncharacterized protein {ECO:0000313|EMBL:CDP52870.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_cont_500_bf_scaffold_5311_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2047..3624)
DNA (1578bp) protein (526aa)
ATP-dependent DNA ligase LigC {ECO:0000313|EMBL:CDP52869.1}; EC=6.5.1.1 {ECO:0000313|EMBL:CDP52869.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ATP-dependent DNA ligase LigC; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase LigC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGY5_PELHB
SCNpilot_cont_500_bf_scaffold_5311_5
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3621..4646)
DNA (1026bp) protein (342aa)
mRNA 3-end processing factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGY4_PELHB
Beta-lactamase {ECO:0000313|EMBL:KKB82629.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
mRNA 3-end processing factor; K07577 putative mRNA 3-end processing factor
SCNpilot_cont_500_bf_scaffold_5311_6
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4758..5267
DNA (510bp) protein (170aa)
Cyclic nucleotide-binding protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W810_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJZ35712.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
SCNpilot_cont_500_bf_scaffold_5311_7
unknown

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comp(5321..5644)
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5311_8
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5649..5858)
DNA (210bp) protein (70aa)
Peptidase M16C associated domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCM7_PELHB
Peptidase M16C associated domain protein {ECO:0000313|EMBL:CDP52867.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
peptidase M16C associated domain protein; K06972
SCNpilot_cont_500_bf_scaffold_5311_9
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5958..7271)
DNA (1314bp) protein (438aa)
Peptidase M16C associated domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCM7_PELHB
peptidase M16C associated domain protein; K06972
Peptidase M16C associated domain protein {ECO:0000313|EMBL:AEQ50699.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
Displaying 9 items

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