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SCNpilot_cont_500_bf_scaffold_5695

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5695_1
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..740)
DNA (738bp) protein (246aa)
Flagellar M-ring protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R930_PELHB
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
flagellar M-ring protein FliF; K02409 flagellar M-ring protein FliF
SCNpilot_cont_500_bf_scaffold_5695_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

843..1469
DNA (627bp) protein (209aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase n=1 Tax=Pseudomonas chlororaphis RepID=UPI0002F584BB
Glutathione S-transferase {ECO:0000313|EMBL:KFL28890.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_cont_500_bf_scaffold_5695_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1571..1849)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R929_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL29855.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5695_4
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2294..2938)
DNA (645bp) protein (215aa)
Flagellar basal-body rod modification protein FlgD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R928_PELHB
flagellar basal body rod modification protein FlgD; K02389 flagellar basal-body rod modification protein FlgD
Flagellar basal-body rod modification protein FlgD {ECO:0000313|EMBL:AEQ52408.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_500_bf_scaffold_5695_5
Leishmania major, Leishmania, Kinetoplastida, Eukaryota

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comp(3158..4726)
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Leishmania major RepID=E9AEK6_LEIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBZ12659.1}; TaxID=5664 species="Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania.;" source="Leishmania major.;"
SCNpilot_cont_500_bf_scaffold_5695_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4986..6137
DNA (1152bp) protein (384aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R926_PELHB
SCNpilot_cont_500_bf_scaffold_5695_7
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6138..6380)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8A9K4_THEID
Uncharacterized protein {ECO:0000313|EMBL:KDB03756.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5695_8
unknown

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comp(6446..6634)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5695_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6838..7407
DNA (570bp) protein (190aa)
Putative RNA polymerase sigma factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R924_PELHB
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:CDP53087.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_5695_10
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7404..9581
DNA (2178bp) protein (726aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000360BAA5 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKC34187.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
von Willebrand factor type A; K07114 uncharacterized protein
SCNpilot_cont_500_bf_scaffold_5695_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9662..10786)
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FN14_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB06920.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5695_12
unknown

Not on your lists

comp(10990..11343)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5695_13
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11472..12422)
DNA (951bp) protein (317aa)
Glyoxalase family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R922_PELHB rbh
Ring-cleaving dioxygenase {ECO:0000313|EMBL:KKB86443.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
glyoxalase family protein; K15975 glyoxalase family protein rbh
Displaying 13 items

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