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SCNpilot_cont_500_bf_scaffold_6718

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_6718_1
unknown

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comp(16..273)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_6718_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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485..916
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJA7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79458.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_6718_3
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(923..1249)
DNA (327bp) protein (109aa)
UPI0003CFC6C1 related cluster n=1 Tax=unknown RepID=UPI0003CFC6C1
cupin
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ADV10353.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_500_bf_scaffold_6718_4
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1258..2664)
DNA (1407bp) protein (469aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
glucuronate isomerase (EC:5.3.1.12); K01812 glucuronate isomerase [EC:5.3.1.12]
UPI0003CEA107 related cluster n=1 Tax=unknown RepID=UPI0003CEA107
SCNpilot_cont_500_bf_scaffold_6718_5
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

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2776..3678
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036B91FD
hypothetical protein
Tax=RBG_13_Chloroflexi_68_17_curated
SCNpilot_cont_500_bf_scaffold_6718_6
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3830..4840)
DNA (1011bp) protein (337aa)
ribosomal RNA large subunit methyltransferase N; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] rbh
Ribosomal RNA large subunit methyltransferase N n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBU8_PELHB rbh
Ribosomal RNA large subunit methyltransferase N {ECO:0000313|EMBL:AEQ50611.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_500_bf_scaffold_6718_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5021..5599)
DNA (579bp) protein (193aa)
Transcriptional regulator, TetR family n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q136A1_RHOPS
regulatory protein TetR
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABE40088.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_500_bf_scaffold_6718_8
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5628..6002)
DNA (375bp) protein (125aa)
transcriptional regulator n=1 Tax=Frankia sp. BCU110501 RepID=UPI000369F261
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:CDP50542.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
helix-turn-helix type 11 domain-containing protein
Displaying 8 items

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