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SCNpilot_cont_500_bf_scaffold_16446

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_16446_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..188)
DNA (186bp) protein (62aa)
50S ribosomal protein L14 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC29_PELHB
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
SCNpilot_cont_500_bf_scaffold_16446_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(254..487)
DNA (234bp) protein (78aa)
30S ribosomal protein S17 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC30_PELHB
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
SCNpilot_cont_500_bf_scaffold_16446_3
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(500..694)
DNA (195bp) protein (65aa)
50S ribosomal protein L29 n=1 Tax=Mesorhizobium thiogangeticum RepID=L0MXW6_9RHIZ
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
SCNpilot_cont_500_bf_scaffold_16446_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(706..1119)
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC32_PELHB
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
SCNpilot_cont_500_bf_scaffold_16446_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1135..1872)
DNA (738bp) protein (246aa)
30S ribosomal protein S3 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC33_PELHB
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
SCNpilot_cont_500_bf_scaffold_16446_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1872..2252)
DNA (381bp) protein (127aa)
50S ribosomal protein L22 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC34_PELHB
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
SCNpilot_cont_500_bf_scaffold_16446_7
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2254..2532)
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A957_STAND
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
SCNpilot_cont_500_bf_scaffold_16446_8
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2536..3018)
DNA (483bp) protein (161aa)
50S ribosomal protein L2 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC36_PELHB
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
SCNpilot_cont_500_bf_scaffold_16446_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3417..3710)
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC37_PELHB
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
SCNpilot_cont_500_bf_scaffold_16446_10
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3707..4327)
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC38_PELHB
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
SCNpilot_cont_500_bf_scaffold_16446_11
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4328..4657)
DNA (330bp) protein (110aa)
50S ribosomal protein L3 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC39_PELHB
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
SCNpilot_cont_500_bf_scaffold_16446_12
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4688..4960)
DNA (273bp) protein (91aa)
50S ribosomal protein L3 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC39_PELHB
Suspect SCG annotation. See neighboring gene [SCNpilot_cont_500_bf_scaffold_16446_11].
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
SCNpilot_cont_500_bf_scaffold_16446_13
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5045..5353)
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=2 Tax=Oligotropha carboxidovorans RepID=RS10_OLICO
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
Displaying 13 items

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