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SCNpilot_P_inoc_Niastella_42_33

SCNPILOT_CONT_500_BF_Sphingobacteriales_43_3
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 3.22 Longest contig: 4.71 Kbp Bin length: 906.90 Kbp GC content: 43.09 %
Contigs count: 609 Features count: 1223 rRNAs count: 0 tRNAs count: 3

Genome completeness

partial RP 11 / 55 BSCG 15 / 51 ASCG 3 / 38
Displaying items 201-250 of 609 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_43415
Species: Arcticibacter svalbardensis (50%)
2 1465 bp 34.61 3.41 96.66
SCNpilot_cont_500_bf_scaffold_55245
Species: Spirosoma radiotolerans (50%)
2 1205 bp 47.63 2.49 65.23
SCNpilot_cont_500_bf_scaffold_64461
Species: Flavihumibacter solisilvae (50%)
2 1046 bp 44.84 2.87 93.79
SCNpilot_cont_500_bf_scaffold_36770
Species: Hassallia byssoidea (50%)
2 1675 bp 44.96 2.99 85.97
SCNpilot_cont_500_bf_scaffold_57936
Species: Niastella koreensis (50%)
2 1157 bp 45.03 2.38 71.56
SCNpilot_cont_500_bf_scaffold_57938
Species: Flavihumibacter sp. ZG627 (50%)
2 1157 bp 42.09 3.67 100.09
SCNpilot_cont_500_bf_scaffold_29910
Species: Niastella koreensis (50%)
2 1971 bp 42.57 2.54 99.24
SCNpilot_cont_500_bf_scaffold_41710
Species: Niastella koreensis (50%)
2 1513 bp 41.18 3.97 89.03
SCNpilot_cont_500_bf_scaffold_52186
Species: Pedobacter heparinus (50%)
2 1262 bp 42.79 4.75 99.60
SCNpilot_cont_500_bf_scaffold_35415
Species: Solitalea canadensis (50%)
2 1726 bp 41.83 2.90 99.77
SCNpilot_cont_500_bf_scaffold_37720
Species: Niastella koreensis (50%)
2 1640 bp 47.56 3.51 96.22
SCNpilot_cont_500_bf_scaffold_31137
Species: Gloeocapsa sp. PCC 7428 (50%)
2 1908 bp 42.61 3.28 69.81
SCNpilot_cont_500_bf_scaffold_61870
Species: Niastella koreensis (50%)
2 1090 bp 44.50 4.82 78.17
SCNpilot_cont_500_bf_scaffold_42362
Species: Emticicia oligotrophica (50%)
2 1494 bp 44.98 4.18 97.59
SCNpilot_cont_500_bf_scaffold_22731
Species: Niastella koreensis (100%)
2 2432 bp 43.75 2.57 84.75
SCNpilot_cont_500_bf_scaffold_44721
Species: Flavihumibacter solisilvae (50%)
2 1431 bp 45.28 3.32 99.58
SCNpilot_cont_500_bf_scaffold_50818
Species: Niabella soli (50%)
2 1288 bp 43.32 5.05 92.47
SCNpilot_cont_500_bf_scaffold_62059
Species: Bacteroides fragilis CAG:558 (50%)
2 1086 bp 31.22 3.68 100.55
SCNpilot_cont_500_bf_scaffold_62571
Species: Niabella soli (100%)
2 1078 bp 44.25 3.48 97.12
SCNpilot_cont_500_bf_scaffold_54499
Species: GWE2_Bacteroidetes_42_39_curated (50%)
2 1220 bp 43.20 3.89 96.15
SCNpilot_cont_500_bf_scaffold_60473
Species: Niastella koreensis (50%)
2 1114 bp 43.99 2.24 89.14
SCNpilot_cont_500_bf_scaffold_50309
Species: Arcticibacter svalbardensis (50%)
2 1299 bp 35.26 3.08 66.97
SCNpilot_cont_500_bf_scaffold_40746
Species: Flavihumibacter solisilvae (50%)
2 1543 bp 43.81 3.08 91.96
SCNpilot_cont_500_bf_scaffold_61111
Species: Niastella koreensis (50%)
2 1102 bp 46.37 4.08 96.10
SCNpilot_cont_500_bf_scaffold_42117
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1500 bp 46.40 2.83 92.00
SCNpilot_cont_500_bf_scaffold_37481
Species: Pedobacter sp. V48 (50%)
2 1649 bp 40.87 3.94 93.33
SCNpilot_cont_500_bf_scaffold_46758
Species: Chryseobacterium piperi (50%)
2 1380 bp 43.48 4.35 90.43
SCNpilot_cont_500_bf_scaffold_63110
Species: Chitinophaga pinensis (50%)
2 1069 bp 39.20 3.98 80.54
SCNpilot_cont_500_bf_scaffold_59680
Species: RIFOXYB2_FULL_Gammaproteobacteria_38_6_curated (50%)
2 1127 bp 33.01 3.77 97.96
SCNpilot_cont_500_bf_scaffold_53025
Species: Niastella koreensis (50%)
2 1247 bp 43.22 4.41 82.76
SCNpilot_cont_500_bf_scaffold_39102
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1593 bp 44.63 2.82 103.01
SCNpilot_cont_500_bf_scaffold_47930
Species: Niabella soli (100%)
2 1350 bp 44.22 3.15 73.11
SCNpilot_cont_500_bf_scaffold_52210
Species: Flavihumibacter petaseus (50%)
2 1261 bp 43.77 3.17 87.55
SCNpilot_cont_500_bf_scaffold_40760
Species: Flavihumibacter solisilvae (50%)
2 1542 bp 46.56 3.24 97.67
SCNpilot_cont_500_bf_scaffold_54260
Species: Chitinophaga pinensis (50%)
2 1224 bp 46.81 3.68 85.78
SCNpilot_cont_500_bf_scaffold_67309
Species: GWF2_Bacteroidetes_33_38_curated (100%)
2 1002 bp 40.42 3.99 100.00
SCNpilot_cont_500_bf_scaffold_47422
Species: Niabella soli (50%)
2 1363 bp 44.53 3.30 97.29
SCNpilot_cont_500_bf_scaffold_49352
Species: Niabella soli (100%)
2 1319 bp 47.54 4.55 80.52
SCNpilot_cont_500_bf_scaffold_47424
Species: Flavihumibacter solisilvae (50%)
2 1363 bp 44.09 4.04 78.80
SCNpilot_cont_500_bf_scaffold_35702
Species: Spirosoma radiotolerans (50%)
2 1715 bp 44.08 3.35 84.31
SCNpilot_cont_500_bf_scaffold_47694
Species: Niastella koreensis (50%)
2 1356 bp 40.41 4.06 108.41
SCNpilot_cont_500_bf_scaffold_66751
Species: Niastella koreensis (50%)
2 1011 bp 42.14 2.72 80.42
SCNpilot_cont_500_bf_scaffold_58319
Species: Niabella soli (50%)
2 1150 bp 45.48 2.61 74.09
SCNpilot_cont_500_bf_scaffold_62352
Species: Chitinophaga pinensis (50%)
2 1081 bp 45.70 3.93 91.30
SCNpilot_cont_500_bf_scaffold_49112
Species: Niastella koreensis (100%)
2 1324 bp 44.94 2.83 93.13
SCNpilot_cont_500_bf_scaffold_64000
Species: Mucilaginibacter paludis (50%)
2 1054 bp 47.63 2.85 97.63
SCNpilot_cont_500_bf_scaffold_61657
Species: Nonlabens marinus (50%)
2 1093 bp 41.72 2.74 91.40
SCNpilot_cont_500_bf_scaffold_47186
Species: Niastella koreensis (50%)
2 1369 bp 43.90 2.56 99.05
SCNpilot_cont_500_bf_scaffold_62612
Species: Fibrisoma limi (50%)
2 1077 bp 39.00 3.71 82.45
SCNpilot_cont_500_bf_scaffold_61149
Species: Niastella koreensis (50%)
2 1102 bp 47.64 2.27 80.58
Displaying items 201-250 of 609 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.