ggKbase home page

SCNpilot_cont_500_bf_scaffold_4612

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4612_1
Planomicrobium glaciei, Planomicrobium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

133..531
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI00037F18BD
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:ETP70756.1}; TaxID=1273538 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Planomicrobium.;" source="Planomicrobium glaciei CHR43.;"
4-carboxymuconolactone decarboxylase
SCNpilot_cont_500_bf_scaffold_4612_2
Gordonia otitidis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

524..1486
DNA (963bp) protein (321aa)
3-hydroxyisobutyrate dehydrogenase; K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
Putative carboxymuconolactone decarboxylase n=1 Tax=Gordonia otitidis NBRC 100426 RepID=H5TJC9_9ACTO
Putative carboxymuconolactone decarboxylase {ECO:0000313|EMBL:GAB33587.1}; TaxID=1108044 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia otitidis NBRC 100426.;"
SCNpilot_cont_500_bf_scaffold_4612_3
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1417..2307)
DNA (891bp) protein (297aa)
ornithine cyclodeaminase/mu-crystallin; K01750 ornithine cyclodeaminase [EC:4.3.1.12]
Ornithine cyclodeaminase/mu-crystallin n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FCN9_VERMA
Ornithine cyclodeaminase {ECO:0000313|EMBL:EWM16638.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
SCNpilot_cont_500_bf_scaffold_4612_4
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2304..3047)
DNA (744bp) protein (248aa)
Oxidoreductase, short-chain dehydrogenase/reductase family protein n=1 Tax=Sagittula stellata E-37 RepID=A3K7Y9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KEP75240.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
butA; oxidoreductase, short-chain dehydrogenase/reductase
SCNpilot_cont_500_bf_scaffold_4612_5
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3059..4168)
DNA (1110bp) protein (370aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KJC65306.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
putative hydrolase
SCNpilot_cont_500_bf_scaffold_4612_6
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4250..4924)
DNA (675bp) protein (225aa)
GntR family transcriptional regulator n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W0B2_9ACTO
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:AGZ41425.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
SCNpilot_cont_500_bf_scaffold_4612_7
Rhodococcus imtechensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5163..6377)
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI0003662943
ROK family transcriptional regulator
ROK family transcriptional regulator {ECO:0000313|EMBL:EID80168.1}; TaxID=1165867 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus imtechensis RKJ300 = JCM 13270.;"
SCNpilot_cont_500_bf_scaffold_4612_8
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6753..7091
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Kribbella catacumbae RepID=UPI00035C323A
short-chain dehydrogenase/reductase SDR
Short chain dehydrogenase family protein {ECO:0000313|EMBL:AID33820.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_cont_500_bf_scaffold_4612_9
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7197..11000
DNA (3804bp) protein (1268aa)
tRNA(Glu)-specific nuclease WapA {ECO:0000313|EMBL:KJL30411.1}; EC=3.1.-.- {ECO:0000313|EMBL:KJL30411.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
YD repeat-containing protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RDY5_9ACTO
secreted protein
SCNpilot_cont_500_bf_scaffold_4612_10
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11511..11828
DNA (318bp) protein (106aa)
Putative uncharacterized protein n=1 Tax=Ralstonia solanacearum K60-1 RepID=H5WCJ9_RALSL
Putative uncharacterized protein {ECO:0000313|EMBL:CCF97520.1}; TaxID=1091042 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum K60-1.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4612_11
unknown

Not on your lists

11976..12383
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4612_12
unknown

Not on your lists

12543..12977
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4612_13
Pseudozyma hubeiensis, Pseudozyma, Ustilaginales, Ustilaginomycetes, Basidiomycota, Fungi

Not on your lists

12955..13200
DNA (246bp) protein (82aa)
Alcohol dehydrogenase n=1 Tax=Pseudozyma hubeiensis (strain SY62) RepID=R9NXR0_PSEHS
Alcohol dehydrogenase {ECO:0000313|EMBL:GAC93424.1}; TaxID=1305764 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; mitosporic Ustilaginaceae; Pseudozyma.;" source="Pseudozyma hubeiensis (strain SY62) (Yeast).;"
SCNpilot_cont_500_bf_scaffold_4612_14
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13200..13784
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Aestuariimicrobium kwangyangense RepID=UPI0003B4CE5B
Uncharacterized protein {ECO:0000313|EMBL:KJQ53834.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4612_15
unknown

Not on your lists

14072..14308
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4612_16
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14556..15074
DNA (519bp) protein (173aa)
tRNA(Glu)-specific nuclease WapA {ECO:0000313|EMBL:KJL30410.1}; EC=3.1.-.- {ECO:0000313|EMBL:KJL30410.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
Secreted protein n=1 Tax=Leifsonia xyli subsp. cynodontis DSM 46306 RepID=U3PC69_LEIXC
secreted protein
SCNpilot_cont_500_bf_scaffold_4612_17
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15130..15495
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JXH2_BURP8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACC76330.1}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
SCNpilot_cont_500_bf_scaffold_4612_18
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15748..16083)
DNA (336bp) protein (112aa)
Lignostilbene-alpha,beta-dioxygenase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NGS5_MICTS
lignostilbene-alpha,beta-dioxygenase
Lignostilbene-alpha,beta-dioxygenase {ECO:0000313|EMBL:BAJ75374.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_4612_19
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16080..16652)
DNA (573bp) protein (191aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NGS4_MICTS
Uncharacterized protein {ECO:0000313|EMBL:CDJ99687.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
aspartate/tyrosine/aromatic aminotransferase
SCNpilot_cont_500_bf_scaffold_4612_20
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16658..17200)
DNA (543bp) protein (181aa)
RNA polymerase sigma 70 n=1 Tax=Microbacterium sp. B19 RepID=UPI00034B32B9
RNA polymerase sigma 70 {ECO:0000313|EMBL:KEP74150.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_4612_21
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17322..17732
DNA (411bp) protein (137aa)
alkaline-shock protein n=1 Tax=Microbacterium sp. B19 RepID=UPI0003483ED8
Alkaline-shock protein {ECO:0000313|EMBL:KEP74149.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4612_22
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17729..17917
DNA (189bp) protein (63aa)
UPI000262A430 related cluster id=7720671 bin=CNBR_ACT species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:CDJ99689.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4612_23
unknown

Not on your lists

17914..18258
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4612_24
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18255..18815
DNA (561bp) protein (187aa)
Uncharacterized protein {ECO:0000313|EMBL:CDJ99692.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
Uncharacterized protein id=7720669 bin=CNBR_ACT species=Arthrobacter sp. genus=Arthrobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4612_25
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18812..19336
DNA (525bp) protein (175aa)
Putative membrane protein {ECO:0000313|EMBL:CDJ99693.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
Putative membrane protein id=7720668 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4612_26
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19610..20104)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037A0152
Uncharacterized protein {ECO:0000313|EMBL:KJL21641.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
bifunctional deaminase-reductase domain-containing protein
Displaying 26 items

View Taxonomy