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SCNpilot_cont_500_bf_scaffold_1077

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1077_1
unknown

Not on your lists

comp(100..222)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1077_2
unknown

Not on your lists

631..1068
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1077_trna_25
unknown

Not on your lists

comp(908..978)
DNA (71bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_trna_24
unknown

Not on your lists

comp(1086..1157)
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_3
Spongospora subterranea, Spongospora, Eukaryota

Not on your lists

comp(1175..2908)
DNA (1734bp) protein (578aa)
NADH-ubiquinone oxidoreductase chain 4 {ECO:0000256|RuleBase:RU003297}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU003297};; TaxID=70186 species="Eukaryota; Rhizaria; Cercozoa; Plasmodiophorida; Plasmodiophoridae; Spongospora.;" source="Spongospora subterranea.;"
nad4, ndhD; nad4; K03881 NADH-ubiquinone oxidoreductase chain 4 [EC:1.6.5.3]
NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Andalucia godoyi RepID=M4QCU1_9EUKA
SCNpilot_cont_500_bf_scaffold_1077_4
Reclinomonas americana, Reclinomonas, Eukaryota

Not on your lists

comp(2923..3231)
DNA (309bp) protein (103aa)
NADH dehydrogenase subunit 4L {ECO:0000313|EMBL:AGH24443.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AGH24443.1};; TaxID=1295595 species="Eukaryota; Jakobida; Histionidae; Reclinomonas.;" source="Reclinomonas americana ATCC 50284.;"
NADH:ubiquinone oxidoreductase subunit 11 or 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH dehydrogenase subunit 4L n=2 Tax=Reclinomonas americana RepID=M4QCQ5_RECAM
SCNpilot_cont_500_bf_scaffold_1077_5
Cyanidium caldarium, Cyanidium, Cyanidiales, Bangiophyceae, Eukaryota

Not on your lists

comp(3259..4284)
DNA (1026bp) protein (342aa)
NADH-ubiquinone oxidoreductase chain 1; EC=1.6.5.3;; NADH dehydrogenase subunit 1; TaxID=2771 species="Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidium.;" source="Cyanidium caldarium.;"
nad1; NADH dehydrogenase subunit 1; K03878 NADH-ubiquinone oxidoreductase chain 1 [EC:1.6.5.3]
NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Cyanidium caldarium RepID=NU1M_CYACA
SCNpilot_cont_500_bf_scaffold_1077_6
Saprolegnia parasitica, Saprolegnia, Saprolegniales, Eukaryota

Not on your lists

comp(4274..6886)
DNA (2613bp) protein (871aa)
Cytochrome c oxidase subunit 1 {ECO:0000256|RuleBase:RU000369}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU000369};; TaxID=695850 species="Eukaryota; Stramenopiles; Oomycetes; Saprolegniales; Saprolegniaceae; Saprolegnia.;" source="Saprolegnia parasitica (strain CBS 223.65).;"
Cox1_1; Cox1_1; K02256 cytochrome c oxidase subunit 1 [EC:1.9.3.1]
Cytochrome c oxidase subunit 1 n=1 Tax=Saprolegnia ferax RepID=Q6E774_SAPFE
SCNpilot_cont_500_bf_scaffold_1077_7
unknown

Not on your lists

comp(6901..8052)
DNA (1152bp) protein (384aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1077_trna_23
unknown

Not on your lists

comp(7909..7980)
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_trna_22
unknown

Not on your lists

comp(7987..8058)
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_trna_21
unknown

Not on your lists

comp(8147..8217)
DNA (71bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_16S_1
unknown

Not on your lists

comp(8263..9715)
DNA (1453bp)
may not be 16S (based on blast) Rose Kantor (10/23/15)
SCNpilot_cont_500_bf_scaffold_1077_8
Spongospora subterranea, Spongospora, Eukaryota

Not on your lists

comp(9789..11336)
DNA (1548bp) protein (516aa)
ATP synthase F1 subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]
ATP synthase subunit alpha n=2 Tax=Chlorokybus atmophyticus RepID=A6YE89_CHLAT
ATP synthase subunit alpha {ECO:0000256|RuleBase:RU003551}; TaxID=70186 species="Eukaryota; Rhizaria; Cercozoa; Plasmodiophorida; Plasmodiophoridae; Spongospora.;" source="Spongospora subterranea.;"
SCNpilot_cont_500_bf_scaffold_1077_trna_20
unknown

Not on your lists

comp(11414..11485)
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_trna_19
unknown

Not on your lists

comp(11584..11654)
DNA (71bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_trna_18
unknown

Not on your lists

comp(11662..11733)
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_9
unknown

Not on your lists

11916..12170
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1077_10
unknown

Not on your lists

comp(12167..12385)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1077_11
unknown

Not on your lists

12874..13152
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1077_12
Mesostigma viride, Mesostigma, Mesostigmatales, Mesostigmatophyceae, Streptophyta, Viridiplantae

Not on your lists

comp(13087..14259)
DNA (1173bp) protein (391aa)
NADH dehydrogenase subunit 7 {ECO:0000313|EMBL:AAL36728.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AAL36728.1};; TaxID=41882 species="Eukaryota; Viridiplantae; Streptophyta; Mesostigmatophyceae; Mesostigmatales; Mesostigmataceae; Mesostigma.;" source="Mesostigma viride (Green alga).;"
NADH dehydrogenase subunit 7 n=1 Tax=Mesostigma viride RepID=Q8W9T0_MESVI
nad7; NADH dehydrogenase subunit 7
SCNpilot_cont_500_bf_scaffold_1077_13
Proteromonas lacertae, Proteromonas, Slopalinida, Eukaryota

Not on your lists

comp(14272..16098)
DNA (1827bp) protein (609aa)
NADH-ubiquinone oxidoreductase chain 5 {ECO:0000256|RuleBase:RU003404, ECO:0000256|SAAS:SAAS00061106}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU003404, ECO:0000256|SAAS:SAAS00061108};; TaxID=42746 species="Eukaryota; Stramenopiles; Slopalinida; Proteromonadidae; Proteromonas.;" source="Proteromonas lacertae (Stramenopile) (Monocercomonoides lacertae).;"
nad5; NADH:ubiquinone oxidoreductase subunit 5; K03883 NADH-ubiquinone oxidoreductase chain 5 [EC:1.6.5.3]
NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Proteromonas lacertae RepID=E2EA12_9STRA
SCNpilot_cont_500_bf_scaffold_1077_14
uncultured Trebouxia photobiont, Trebouxia, Microthamniales, Trebouxiophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(16115..16945)
DNA (831bp) protein (277aa)
ATP synthase subunit a n=1 Tax=uncultured Trebouxia photobiont RepID=G8IRP5_9CHLO
ATP synthase subunit a {ECO:0000256|RuleBase:RU004450}; TaxID=285713 species="Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Microthamniales; Trebouxia; environmental samples.;" source="uncultured Trebouxia photobiont.;"
atp6_1; ATPase subunit 6.1
SCNpilot_cont_500_bf_scaffold_1077_trna_17
unknown

Not on your lists

comp(17007..17077)
DNA (71bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_trna_16
unknown

Not on your lists

comp(17089..17159)
DNA (71bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_trna_15
unknown

Not on your lists

comp(17171..17242)
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_15
Pycnococcus provasolii, Pycnococcus, Chlorophyta, Viridiplantae

Not on your lists

comp(17261..18139)
DNA (879bp) protein (293aa)
Cytochrome c oxidase subunit 3 n=1 Tax=Pycnococcus provasolii RepID=D3W6W1_9CHLO
Cytochrome c oxidase subunit 3 {ECO:0000256|RuleBase:RU003375}; TaxID=41880 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Pycnococcaceae; Pycnococcus.;" source="Pycnococcus provasolii.;"
cox3; cytochrome oxidase subunit 3
SCNpilot_cont_500_bf_scaffold_1077_trna_14
unknown

Not on your lists

comp(18155..18225)
DNA (71bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_trna_13
unknown

Not on your lists

comp(18237..18307)
DNA (71bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1077_trna_12
unknown

Not on your lists

comp(18322..18393)
DNA (72bp)
transferRNA
Displaying items 1-30 of 55 in total

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