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SCNpilot_cont_500_bf_scaffold_611

Search features with annotation key words

Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_611_1
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..2164)
DNA (2163bp) protein (721aa)
Rifamycin polyketide synthase n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1IGY2_9PSEU
Rifamycin polyketide synthase {ECO:0000313|EMBL:EOD69729.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
rifA; rifamycin polyketide synthase
SCNpilot_cont_500_bf_scaffold_611_2
Amycolatopsis azurea, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2869..3873
DNA (1005bp) protein (335aa)
Endoribonuclease L-PSP n=1 Tax=Amycolatopsis azurea DSM 43854 RepID=M2QPK9_9PSEU
Endoribonuclease L-PSP {ECO:0000313|EMBL:EMD28616.1}; TaxID=1238180 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis azurea DSM 43854.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_611_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3928..4407
DNA (480bp) protein (160aa)
Putative F420-dependent enzyme n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D056_PSEUX
F420-dependent protein
Putative F420-dependent enzyme {ECO:0000313|EMBL:AEA25712.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_611_4
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4691..5275)
DNA (585bp) protein (195aa)
Putative transcriptional regulator, GntR family n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BCE6_STRRD
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:ACZ89975.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCNpilot_cont_500_bf_scaffold_611_5
unknown

Not on your lists

6056..6460
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_611_6
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6491..7186)
DNA (696bp) protein (232aa)
Hemerythrin HHE cation binding domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CWX3_PSEUX
hemerythrin HHE cation binding domain-containing protein
Hemerythrin HHE cation binding domain protein {ECO:0000313|EMBL:AEA24228.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_611_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7269..9266)
DNA (1998bp) protein (666aa)
Transcriptional regulator, putative ATPase, winged helix family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CWX2_PSEUX
winged helix family transcriptional regulator
Transcriptional regulator, putative ATPase, winged helix family {ECO:0000313|EMBL:AEA24227.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_611_8
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9260..10162)
DNA (903bp) protein (301aa)
Transcriptional regulator, putative ATPase, winged helix family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CWX2_PSEUX
winged helix family transcriptional regulator
Transcriptional regulator, putative ATPase, winged helix family {ECO:0000313|EMBL:AEA24227.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_611_9
Streptomyces sp. NTK 937, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11271..11723)
DNA (453bp) protein (151aa)
Acetyltransferase n=1 Tax=Streptomyces sp. AA4 RepID=D9UW80_9ACTO
GCN5 family acetyltransferase {ECO:0000313|EMBL:KDQ70455.1}; TaxID=1487711 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NTK 937.;"
N-acetyltransferase GCN5
SCNpilot_cont_500_bf_scaffold_611_10
Streptomyces sp. PVA 94-07, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12308..13615)
DNA (1308bp) protein (436aa)
Major facilitator superfamily protein n=2 Tax=Streptomyces RepID=V4IN29_9ACTO
Major facilitator superfamily protein {ECO:0000313|EMBL:ESQ04506.1}; TaxID=1223307 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PVA 94-07.;"
major facilitator superfamily protein
SCNpilot_cont_500_bf_scaffold_611_11
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13612..14610)
DNA (999bp) protein (333aa)
Linear gramicidin synthase subunit C {ECO:0000313|EMBL:ELX07965.1}; EC=5.1.1.- {ECO:0000313|EMBL:ELX07965.1};; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
Linear gramicidin synthase subunit C n=1 Tax=Janthinobacterium sp. HH01 RepID=L9P8L3_9BURK
taurine catabolism dioxygenase TauD/TfdA rbh
SCNpilot_cont_500_bf_scaffold_611_12
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14648..15463)
DNA (816bp) protein (272aa)
Long-chain-fatty-acid--CoA ligase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QCF0_9DELT
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EPX59029.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
amino acid adenylation protein
SCNpilot_cont_500_bf_scaffold_611_13
Mycobacterium rhodesiae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15567..16133)
DNA (567bp) protein (189aa)
Formyl-CoA transferase {ECO:0000313|EMBL:EHB58754.1}; EC=2.8.3.16 {ECO:0000313|EMBL:EHB58754.1};; TaxID=931627 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium rhodesiae JS60.;"
Formyl-CoA transferase n=1 Tax=Mycobacterium rhodesiae JS60 RepID=G4HQD2_MYCRH
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_cont_500_bf_scaffold_611_14
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16468..19944
DNA (3477bp) protein (1159aa)
Uncharacterized protein n=1 Tax=Frankia sp. QA3 RepID=I8QN09_9ACTO rbh
Uncharacterized protein {ECO:0000313|EMBL:EIV91294.1}; TaxID=710111 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_611_15
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19947..25889
DNA (5943bp) protein (1981aa)
Integrins alpha chain n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y995_NITMU rbh
integrins alpha chain rbh
Integrins alpha chain {ECO:0000313|EMBL:ABB74676.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_500_bf_scaffold_611_16
unknown

Not on your lists

25910..28021
DNA (2112bp) protein (704aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_611_17
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28034..28759
DNA (726bp) protein (242aa)
Integrase catalytic region n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8LGK8_FRASN
integrase catalytic subunit
Integrase catalytic region {ECO:0000313|EMBL:ABW09947.1}; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
SCNpilot_cont_500_bf_scaffold_611_18
unknown

Not on your lists

28879..29223
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_611_19
unknown

Not on your lists

comp(30337..30570)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_611_20
unknown

Not on your lists

30727..31278
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_611_21
Streptomyces turgidiscabies, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31269..34751
DNA (3483bp) protein (1161aa)
Tetratricopeptide repeat protein n=1 Tax=Streptomyces turgidiscabies Car8 RepID=L7F1R5_9ACTO
Tetratricopeptide repeat protein {ECO:0000313|EMBL:ELP65247.1}; TaxID=698760 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces turgidiscabies Car8.;"
tetratricopeptide repeat-containing protein
SCNpilot_cont_500_bf_scaffold_611_22
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35398..36807)
DNA (1410bp) protein (470aa)
Transposase IS4 family protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L6H7_PSEUX rbh
transposase IS4 family protein rbh
Transposase IS4 family protein {ECO:0000313|EMBL:AEA28871.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_611_23
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37891..38703)
DNA (813bp) protein (271aa)
XRE family transcriptional regulator n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEE96
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACU39495.1}; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
SCNpilot_cont_500_bf_scaffold_611_24
Mycobacterium lentiflavum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

39333..41348
DNA (2016bp) protein (672aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00037B1B26
Ser/Thr protein kinase {ECO:0000313|EMBL:CQD14933.1}; TaxID=141349 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium lentiflavum.;"
Ser/Thr protein kinase
SCNpilot_cont_500_bf_scaffold_611_25
Amycolatopsis azurea, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41614..41907
DNA (294bp) protein (98aa)
transposase n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI00038078D4
transposase IS3/IS911
Mobile element protein {ECO:0000313|EMBL:EMD21703.1}; TaxID=1238180 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis azurea DSM 43854.;"
SCNpilot_cont_500_bf_scaffold_611_26
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41955..42788
DNA (834bp) protein (278aa)
transposase IS401 n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI00037DCCAC rbh
Integrase {ECO:0000313|EMBL:AIJ23031.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
integrase; K07497 putative transposase rbh
Displaying 26 items

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