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SCNpilot_cont_500_bf_scaffold_4626

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4626_1
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3..1259)
DNA (1257bp) protein (419aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUS5_CHIPD
PAS/PAC sensor signal transduction histidine kinase
SCNpilot_cont_500_bf_scaffold_4626_2
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1291..2436)
DNA (1146bp) protein (382aa)
osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] rbh
Osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUS6_CHIPD rbh
Histidine kinase {ECO:0000313|EMBL:KIC96088.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
SCNpilot_cont_500_bf_scaffold_4626_3
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(2436..2999)
DNA (564bp) protein (188aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
potassium-transporting ATPase subunit C (EC:3.6.3.12); K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12]
potassium transporter KtrB n=1 Tax=Spirosoma panaciterrae RepID=UPI00037B2BB1
SCNpilot_cont_500_bf_scaffold_4626_4
Alistipes sp. CAG:157, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3010..3648)
DNA (639bp) protein (213aa)
K+-transporting ATPase, B subunit (EC:3.6.3.12)
potassium-transporting ATPase subunit B n=1 Tax=Segetibacter koreensis RepID=UPI000367BB6E
Potassium-transporting ATPase B chain {ECO:0000313|EMBL:CCZ97812.1}; TaxID=1262692 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:157.;"
SCNpilot_cont_500_bf_scaffold_4626_5
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(3657..5060)
DNA (1404bp) protein (468aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsa
K+-transporting ATPase subunit B; K01547 K+-transporting ATPase ATPase B chain [EC:3.6.3.12]
potassium-transporting ATPase subunit B n=1 Tax=Flavobacterium rivuli RepID=UPI00035C926E
SCNpilot_cont_500_bf_scaffold_4626_6
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(5086..6798)
DNA (1713bp) protein (571aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Flags: Precursor;; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="F
kdpA; potassium-transporting ATPase subunit A (EC:3.6.3.12); K01546 K+-transporting ATPase ATPase A chain [EC:3.6.3.12] rbh
potassium-transporting ATPase subunit A n=1 Tax=Segetibacter koreensis RepID=UPI0003629DAA rbh
SCNpilot_cont_500_bf_scaffold_4626_7
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(7202..8557)
DNA (1356bp) protein (452aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUT4_CHIPD rbh
Fis family transcriptional regulator rbh
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ACU61082.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_500_bf_scaffold_4626_trna_1
unknown

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8631..8715
DNA (85bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_4626_8
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8917..10149
DNA (1233bp) protein (411aa)
Probable transposase n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=R7RU48_FLAPJ
Probable transposase {ECO:0000313|EMBL:CDF59567.1}; TaxID=402612 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511).;"
integrase family protein
SCNpilot_cont_500_bf_scaffold_4626_9
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(10338..11105)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QVE9_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB42781.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_4626_10
unknown

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comp(11098..11502)
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4626_11
unknown

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comp(11508..11795)
DNA (288bp) protein (96aa)

This feature has no annotations

Displaying 12 items

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