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SCNpilot_cont_500_bf_scaffold_3064

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3064_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(239..925)
DNA (687bp) protein (229aa)
Putative signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TM54_NIAKG
putative signal transduction histidine kinase
Putative signal transduction histidine kinase {ECO:0000313|EMBL:AEV99827.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_500_bf_scaffold_3064_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1105..4002)
DNA (2898bp) protein (966aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] rbh
Leucine--tRNA ligase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP43_NIAKG rbh
SCNpilot_cont_500_bf_scaffold_3064_3
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4172..5047
DNA (876bp) protein (292aa)
Cell division protein FtsX n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ64_CHIPD
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein; K09811 cell division transport system permease protein
SCNpilot_cont_500_bf_scaffold_3064_4
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5112..5417
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP41_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO45061.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_cont_500_bf_scaffold_3064_5
Flavobacterium branchiophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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5423..6154
DNA (732bp) protein (244aa)
uppP; undecaprenyl-diphosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27]
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006, ECO:0000313|EMBL:CCB70718.1}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006, ECO:0000313|EMBL:CCB70718.1};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1034807 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium branchiophilum (strain FL-15).;"
Undecaprenyl-diphosphatase n=1 Tax=Flavobacterium branchiophilum (strain FL-15) RepID=G2Z4Z9_FLABF
SCNpilot_cont_500_bf_scaffold_3064_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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6161..7648
DNA (1488bp) protein (496aa)
MFS transporter permease n=1 Tax=Niabella aurantiaca RepID=UPI00036425C9 rbh
MFS transporter permease {ECO:0000313|EMBL:AHF15992.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein; K06902 MFS transporter, UMF1 family
SCNpilot_cont_500_bf_scaffold_3064_7
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7651..8424
DNA (774bp) protein (258aa)
Beta-lactamase domain protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NRB5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAO45064.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
Zn-dependent hydrolase
SCNpilot_cont_500_bf_scaffold_3064_8
Cesiribacter andamanensis, Cesiribacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(8476..8778)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7NQC5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EMR03925.1}; TaxID=1279009 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesiribacter andamanensis AMV16.;"
plasmid stabilization system
SCNpilot_cont_500_bf_scaffold_3064_9
unknown

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comp(8763..9005)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3064_10
Parcubacteria bacterium GW2011_GWA2_46_9, Parcubacteria, Bacteria

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9244..10038
DNA (795bp) protein (265aa)
Uncharacterized protein n=8 Tax=Escherichia coli RepID=I0VS60_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KKU48664.1}; TaxID=1618838 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_46_9.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3064_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10078..10878)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP36_NIAKG rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW03154.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_500_bf_scaffold_3064_12
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(10875..11867)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP35_NIAKG rbh
Uncharacterized protein {ECO:0000313|EMBL:KIF38339.1}; Flags: Fragment;; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_3064_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11905..12501
DNA (597bp) protein (199aa)
Holliday junction endonuclease RuvC; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).
Holliday junction endonuclease RuvC n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP34_NIAKG
SCNpilot_cont_500_bf_scaffold_3064_14
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12612..13049
DNA (438bp) protein (146aa)
TM2 domain containing protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GTN1_9BACT
TM2 domain containing protein {ECO:0000313|EMBL:CCH57261.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3064_15
unknown

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comp(13164..13484)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3064_16
unknown

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comp(13503..13970)
DNA (468bp) protein (156aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3064_17
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14049..14915)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QET6_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB41280.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_3064_18
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14860..15723)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GTN2_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCH57262.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3064_19
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15720..16172)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI00037D8FD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB41282.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_3064_20
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16169..16891)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI0003684E21
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB41283.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_3064_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16902..17294)
DNA (393bp) protein (131aa)
Histidine triad (HIT) protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP33_NIAKG
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation
Histidine triad (HIT) protein {ECO:0000313|EMBL:AEW03151.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_500_bf_scaffold_3064_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17291..17905)
DNA (615bp) protein (205aa)
Transcription elongation factor GreA n=1 Tax=Niabella soli DSM 19437 RepID=H1NRA6_9SPHI
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
transcription elongation factor GreA; K03624 transcription elongation factor GreA
SCNpilot_cont_500_bf_scaffold_3064_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18072..18995)
DNA (924bp) protein (308aa)
Phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] rbh
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:AEW03149.1}; EC=1.1.1.95 {ECO:0000313|EMBL:AEW03149.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Phosphoglycerate dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP31_NIAKG rbh
SCNpilot_cont_500_bf_scaffold_3064_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(19017..19784)
DNA (768bp) protein (256aa)
dimethyladenosine transferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] rbh
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP30_NIAKG rbh
Displaying 24 items

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