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SCNpilot_cont_500_bf_scaffold_3582

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3582_1
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(171..731)
DNA (561bp) protein (187aa)
phytanoyl-CoA dioxygenase n=1 Tax=Segetibacter koreensis RepID=UPI00036381EA
Putative L-proline 4-hydroxylase {ECO:0000313|EMBL:EPR68368.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
phytanoyl-CoA dioxygenase
SCNpilot_cont_500_bf_scaffold_3582_2
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(731..2347)
DNA (1617bp) protein (539aa)
Putative dehydrogenase n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FXC8_ECHVK rbh
Oxidoreductase {ECO:0000313|EMBL:AHM63057.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_3582_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2390..2788)
DNA (399bp) protein (133aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIY2_NIAKG
two component transcriptional regulator, LuxR family
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEV97499.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_500_bf_scaffold_3582_4
unknown

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comp(2992..3414)
DNA (423bp) protein (141aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3582_5
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3416..3940)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KP60_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE48854.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_cont_500_bf_scaffold_3582_6
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3945..4352)
DNA (408bp) protein (136aa)
Uncharacterized protein {ECO:0000313|EMBL:KFF05003.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
Putative uncharacterized protein id=4318783 bin=GWF2_Bacteroidetes_42_66 species=Prevotella oralis genus=Prevotella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3582_7
Bacteroides clarus CAG:160, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4334..4816)
DNA (483bp) protein (161aa)
Sigma-70 region 2 n=1 Tax=Bacteroides clarus CAG:160 RepID=R6LBP3_9BACE
Sigma-70 region 2 {ECO:0000313|EMBL:CDB83225.1}; TaxID=1263039 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides clarus CAG:160.;"
RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_3582_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5000..7318
DNA (2319bp) protein (773aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPJ5_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97816.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_500_bf_scaffold_3582_9
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

7341..9845
DNA (2505bp) protein (835aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EAJ9_RUNSL rbh
hypothetical protein; K02004 putative ABC transport system permease protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI48370.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_cont_500_bf_scaffold_3582_10
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9853..12249
DNA (2397bp) protein (799aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QIY1_SPILD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADB36995.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_3582_11
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12253..12843)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000379B5B2
hypothetical protein
Outer membrane protein-like protein {ECO:0000313|EMBL:ACT94395.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_500_bf_scaffold_3582_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12911..13435)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNZ8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02083.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_500_bf_scaffold_3582_13
unknown

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comp(13432..13632)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3582_14
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13647..13796
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IKI5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE99313.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3582_15
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13848..16115)
DNA (2268bp) protein (756aa)
Outer membrane protein/protective antigen OMA87 n=1 Tax=Flavobacterium sp. CF136 RepID=J2S4Z4_9FLAO rbh
Surface antigen (D15) {ECO:0000313|EMBL:KGO91953.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
surface antigen (D15) rbh
SCNpilot_cont_500_bf_scaffold_3582_16
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16118..16681)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. F52 RepID=J0RNF0_9FLAO
Contig_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22795.1}; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
hypothetical protein
Displaying 16 items

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