ggKbase home page

SCNpilot_cont_500_bf_scaffold_678

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_678_1
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(323..625)
DNA (303bp) protein (101aa)
Transposase IS3/IS911 family protein n=1 Tax=Bacillus methanolicus PB1 RepID=I3DUP7_BACMT
Transposase and inactivated derivatives {ECO:0000313|EMBL:GAF27425.1}; TaxID=1325331 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetica Y72.;"
transposase IS3/IS911 family protein; K07497 putative transposase
SCNpilot_cont_500_bf_scaffold_678_2
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(836..1735)
DNA (900bp) protein (300aa)
Acetoin catabolism protein X n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LJB6_THEPS
Uncharacterized protein {ECO:0000313|EMBL:KGM42948.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
acox; acetoin catabolism protein X
SCNpilot_cont_500_bf_scaffold_678_3
Brevibacillus agri, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1831..3078)
DNA (1248bp) protein (416aa)
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Bacillus acidiproducens RepID=UPI0003608427
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:ELK43896.1}; TaxID=1246477 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus agri BAB-2500.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_678_4
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(3088..4125)
DNA (1038bp) protein (346aa)
AcoB2; thiamine pyrophosphate-dependent dehydrogenase, E1 component beta subunit; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] id=14628977 bin=bin8_Chloro species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi rbh
AcoB2; thiamine pyrophosphate-dependent dehydrogenase, E1 component beta subunit; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] rbh
Tax=CSP1_4_Chloroflexi
SCNpilot_cont_500_bf_scaffold_678_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4183..5181)
DNA (999bp) protein (333aa)
pyruvate dehydrogenase (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] rbh
Pyruvate dehydrogenase (Acetyl-transferring) n=2 Tax=Alicycliphilus denitrificans RepID=E8U1T7_ALIDB rbh
Pyruvate dehydrogenase {ECO:0000313|EMBL:GAO23224.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_cont_500_bf_scaffold_678_6
unknown

Not on your lists

comp(5435..6238)
DNA (804bp) protein (268aa)
helix-turn-helix domain-containing protein
SCNpilot_cont_500_bf_scaffold_678_7
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

6330..7556
DNA (1227bp) protein (409aa)
AceF2; dihydrolipoamide acyltransferase; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Dihydrolipoamide acyltransferases n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8RBW8_THETN
Dihydrolipoamide acyltransferases {ECO:0000313|EMBL:AAM23952.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 /; JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis).;"
SCNpilot_cont_500_bf_scaffold_678_8
RBG_13_Chloroflexi_50_21_curated, Chloroflexi, Bacteria

Not on your lists

comp(8085..10373)
DNA (2289bp) protein (763aa)
Peptidase S8 and S53 subtilisin kexin sedolisin n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IXE5_9GAMM rbh
bpr; Bacillopeptidase F
Tax=RBG_13_Chloroflexi_50_21_curated
SCNpilot_cont_500_bf_scaffold_678_9
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(10382..12319)
DNA (1938bp) protein (646aa)
hypothetical protein n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI000373B44B
putative integral membrane protein; K14166 copper transport protein
Tax=RBG_16_Actinobacteria_68_12_curated
SCNpilot_cont_500_bf_scaffold_678_10
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12337..12855)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI000363B546
Uncharacterized protein {ECO:0000313|EMBL:EWT01394.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
SCNpilot_cont_500_bf_scaffold_678_11
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12967..15999)
DNA (3033bp) protein (1011aa)
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI00038106C9 rbh
Uncharacterized protein {ECO:0000313|EMBL:EWT01395.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
putative multicopper oxidase
SCNpilot_cont_500_bf_scaffold_678_12
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16064..17389)
DNA (1326bp) protein (442aa)
ferroxidase type 3 (EC:1.16.3.1) rbh
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI00036E3C4B rbh
Multicopper oxidase {ECO:0000313|EMBL:EWT01383.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
SCNpilot_cont_500_bf_scaffold_678_13
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17430..18737)
DNA (1308bp) protein (436aa)
ferroxidase (EC:1.16.3.1) rbh
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI0003790E66 rbh
Multicopper oxidase {ECO:0000313|EMBL:EWT01384.1}; Flags: Fragment;; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
SCNpilot_cont_500_bf_scaffold_678_14
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18833..24538)
DNA (5706bp) protein (1902aa)
pectin lyase-like protein (EC:4.2.2.-) rbh
Putative uncharacterized protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IXE0_9GAMM rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EGW23197.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
SCNpilot_cont_500_bf_scaffold_678_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(25148..25801)
DNA (654bp) protein (218aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSJ0_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF57190.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component LuxR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_678_16

Not on your lists

comp(25836..28079)
DNA (2244bp) protein (748aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI0002DF4194
Marine sediment metagenome DNA, contig: S01H1_L00960 {ECO:0000313|EMBL:GAF72731.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
multi-sensor signal transduction histidine kinase
SCNpilot_cont_500_bf_scaffold_678_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28211..29473)
DNA (1263bp) protein (421aa)
PbrT family lead (Pb2+) uptake porter n=1 Tax=Neisseria shayeganii 871 RepID=G4CHZ7_9NEIS
Iron transporter {ECO:0000313|EMBL:KIZ47247.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
efeO; hypothetical protein; K07224 putative lipoprotein
SCNpilot_cont_500_bf_scaffold_678_18
Deinococcus gobiensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

30050..30400
DNA (351bp) protein (117aa)
Transposase n=1 Tax=Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 / I-0) RepID=H8H1J5_DEIGI
transposase
Transposase {ECO:0000313|EMBL:AFD27392.1}; TaxID=745776 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 /; I-0).;"
SCNpilot_cont_500_bf_scaffold_678_19
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

comp(30593..33415)
DNA (2823bp) protein (941aa)
Adenylate/guanylate cyclase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SSM8_9BACT
Adenylate/guanylate cyclase {ECO:0000313|EMBL:BAL59164.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
LuxR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_678_20
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

33578..34999
DNA (1422bp) protein (474aa)
lignostilbene-alpha,beta-dioxygenase (EC:1.13.11.-) rbh
Carotenoid oxygenase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TJN0_9CHLR rbh
Carotenoid oxygenase {ECO:0000313|EMBL:EFH89637.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
SCNpilot_cont_500_bf_scaffold_678_21
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

35199..35891
DNA (693bp) protein (231aa)
UPI0003D5D3C9 related cluster n=1 Tax=unknown RepID=UPI0003D5D3C9
Uncharacterized protein {ECO:0000313|EMBL:KIL42006.1}; TaxID=1590651 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. VKM B-2647.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_678_22
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(36344..39310)
DNA (2967bp) protein (989aa)
Uncharacterized protein n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6VSK2_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCF83203.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
hypothetical protein
Displaying 22 items

View Taxonomy