ggKbase home page

SCNpilot_cont_500_bf_scaffold_172

Search features with annotation key words

Displaying items 1-30 of 116 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_172_1
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(565..1365)
DNA (801bp) protein (267aa)
Lipolytic enzyme, G-D-S-L n=1 Tax=Rhodovulum sp. PH10 RepID=J6J0Q0_9RHOB
Lipolytic enzyme, G-D-S-L {ECO:0000313|EMBL:EJW10655.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
G-D-S-L family lipolytic protein
SCNpilot_cont_500_bf_scaffold_172_2
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1378..2130)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UBQ8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW10656.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_172_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2127..3320)
DNA (1194bp) protein (398aa)
OpgC protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PH72_9RHOB rbh
OpgC protein {ECO:0000313|EMBL:EJW10657.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
putative OpgC protein
SCNpilot_cont_500_bf_scaffold_172_4
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3359..3751
DNA (393bp) protein (131aa)
ApaG n=1 Tax=Afipia birgiae RepID=UPI0002ED04BA
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
apaG; ApaG protein; K06195 ApaG protein
SCNpilot_cont_500_bf_scaffold_172_5
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3829..4557)
DNA (729bp) protein (243aa)
UPI0003D1B606 related cluster n=1 Tax=unknown RepID=UPI0003D1B606
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH74903.1}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
SCNpilot_cont_500_bf_scaffold_172_6

Not on your lists

comp(4554..5600)
DNA (1047bp) protein (349aa)
Putative Hsp33-like chaperonin n=1 Tax=uncultured prokaryote AT5 RepID=D3W8I4_9ZZZZ rbh
Putative Hsp33-like chaperonin {ECO:0000313|EMBL:ACX33933.1}; TaxID=672203 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote AT5.;"
hslO; Hsp33-like chaperonin; K04083 molecular chaperone Hsp33
SCNpilot_cont_500_bf_scaffold_172_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5707..6654)
DNA (948bp) protein (316aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_01109}; Short=OTCase {ECO:0000255|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000255|HAMAP-Rule:MF_01109};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Ornithine carbamoyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=OTC_NITHX
SCNpilot_cont_500_bf_scaffold_172_8

Not on your lists

comp(6651..7937)
DNA (1287bp) protein (429aa)
argD; acetylornithine transaminase protein (EC:2.6.1.11); K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
Hypothetical bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein n=1 Tax=uncultured prokaryote AT5 RepID=D3W8I2_9ZZZZ rbh
Hypothetical bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein {ECO:0000313|EMBL:ACX33931.1}; TaxID=672203 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote AT5.;"
SCNpilot_cont_500_bf_scaffold_172_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8234..8725
DNA (492bp) protein (164aa)
GcrA cell cycle regulator n=2 Tax=Oligotropha carboxidovorans RepID=B6JD65_OLICO
GcrA cell cycle regulator; K13583 GcrA cell cycle regulator
Putative cell cycle regulator protein {ECO:0000313|EMBL:AEI07970.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_172_10
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8816..9517)
DNA (702bp) protein (234aa)
Response regulator in two-component regulatory system with PhoR (Or CreC), regulation of Pi uptake (OmpR family) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TUF9_9BRAD
Response regulator in two-component regulatory system with PhoR (Or CreC), regulation of Pi uptake (OmpR family) {ECO:0000313|EMBL:CCE10097.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
winged helix family two component transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
SCNpilot_cont_500_bf_scaffold_172_11
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9537..10256)
DNA (720bp) protein (240aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SX43_9BRAD
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
phoU; transcriptional repressor for high-affinity phosphate uptake; K02039 phosphate transport system protein
SCNpilot_cont_500_bf_scaffold_172_12

Not on your lists

comp(10270..11097)
DNA (828bp) protein (276aa)
pstB; phosphate transporter ATP-binding protein; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
Putative phosphate ABC transporter ATPase subunit n=1 Tax=uncultured prokaryote AT5 RepID=D3W8H4_9ZZZZ
Putative phosphate ABC transporter ATPase subunit {ECO:0000313|EMBL:ACX33923.1}; TaxID=672203 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote AT5.;"
SCNpilot_cont_500_bf_scaffold_172_13
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11094..11948)
DNA (855bp) protein (285aa)
phosphate transporter permease subunit PtsA n=1 Tax=Methylocystis parvus RepID=UPI0002F28D57
Phosphate transport system permease protein PstA {ECO:0000313|EMBL:EJW10962.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
phosphate ABC transporter permease; K02038 phosphate transport system permease protein
SCNpilot_cont_500_bf_scaffold_172_14
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11945..12943)
DNA (999bp) protein (333aa)
Phosphate transport system permease protein PstC n=1 Tax=Rhodovulum sp. PH10 RepID=J6LCH6_9RHOB rbh
Phosphate transport system permease protein PstC {ECO:0000313|EMBL:EJW10963.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
phosphate ABC transporter permease; K02037 phosphate transport system permease protein
SCNpilot_cont_500_bf_scaffold_172_15
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13009..14055)
DNA (1047bp) protein (349aa)
Phosphate ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FGC5_9RHIZ
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
high-affinity phosphate transport protein, ABC superfamily, peri_bind
SCNpilot_cont_500_bf_scaffold_172_16
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14244..15434)
DNA (1191bp) protein (397aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
Two-component sensor histidine kinase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z1S6_9BRAD
two-component sensor histidine kinase
SCNpilot_cont_500_bf_scaffold_172_17
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15451..16491)
DNA (1041bp) protein (347aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI0002F1DB8C
Membrane protein {ECO:0000313|EMBL:ETR77276.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein; K07027
SCNpilot_cont_500_bf_scaffold_172_18
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16666..17625)
DNA (960bp) protein (320aa)
Possible periplasmic substrate-binding protein, ABC-type transporter n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YKX4_MOBAS
Hydroxymethylpyrimidine ABC transporter, substrate-binding component {ECO:0000313|EMBL:CDM23849.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
aliphatic sulphonate ABC transporter; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_172_19
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17715..19013)
DNA (1299bp) protein (433aa)
Phthalate 4,5-dioxygenase, oxygenase subunit n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12C99_POLSJ
phthalate 4,5-dioxygenase, oxygenase subunit
Phthalate 4,5-dioxygenase, oxygenase subunit {ECO:0000313|EMBL:ABE43843.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_cont_500_bf_scaffold_172_20
unknown

Not on your lists

19093..19188
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_172_21
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19185..20147
DNA (963bp) protein (321aa)
nadC2; nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Phthalate dioxygenase reductase OphA {ECO:0000313|EMBL:AEI81075.1}; EC=1.-.-.- {ECO:0000313|EMBL:AEI81075.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
Phthalate dioxygenase reductase OphA n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GSL7_CUPNN
SCNpilot_cont_500_bf_scaffold_172_22
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20153..21346
DNA (1194bp) protein (398aa)
4,5-dihydroxyphthalate dehydrogenase (EC:1.3.1.64) rbh
4,5-dihydroxyphthalate dehydrogenase {ECO:0000313|EMBL:ABE43841.1}; EC=1.3.1.64 {ECO:0000313|EMBL:ABE43841.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
4,5-dihydroxyphthalate dehydrogenase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12CA1_POLSJ rbh
SCNpilot_cont_500_bf_scaffold_172_23
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21352..21987
DNA (636bp) protein (212aa)
Transcriptional regulator, MarR family n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HXT4_BORPD
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:KHS13893.1}; TaxID=87883 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans.;"
SCNpilot_cont_500_bf_scaffold_172_24
unknown

Not on your lists

22092..22454
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_172_25
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22406..22750
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ID12_METNO
Dihydroorotate dehydrogenase {ECO:0000313|EMBL:KGM30343.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_172_26
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22744..24105)
DNA (1362bp) protein (454aa)
4-hydroxybenzoate decarboxylase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW63_RHITR
3-octaprenyl-4-hydroxybenzoate carboxy-lyase {ECO:0000313|EMBL:KJC56900.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
4-hydroxybenzoate decarboxylase
SCNpilot_cont_500_bf_scaffold_172_27
bacterium YEK0313, Bacteria

Not on your lists

comp(24122..25768)
DNA (1647bp) protein (549aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Urocanate hydratase (EC:4.2.1.49)
urocanate hydratase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003492774 rbh
SCNpilot_cont_500_bf_scaffold_172_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25779..26867)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VP33_RHILT
Uncharacterized protein {ECO:0000313|EMBL:KFC70100.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Conservative hypothetical protein probably involved in hydantoin, pyrimidine utilization
SCNpilot_cont_500_bf_scaffold_172_29
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26879..28138)
DNA (1260bp) protein (420aa)
allantoate amidohydrolase; K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87]
allantoate amidohydrolase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003451B9E
Uncharacterized protein {ECO:0000313|EMBL:KJC56899.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_cont_500_bf_scaffold_172_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28138..29523)
DNA (1386bp) protein (462aa)
Allantoinase {ECO:0000313|EMBL:AHK05027.1}; EC=3.5.2.5 {ECO:0000313|EMBL:AHK05027.1};; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
amidohydrolase; K01466 allantoinase [EC:3.5.2.5]
Amidohydrolase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11F97_MESSB
Displaying items 1-30 of 116 in total

View Taxonomy