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SCNpilot_cont_500_bf_scaffold_351

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_351_1
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(308..3823)
DNA (3516bp) protein (1172aa)
Sensor histidine kinase n=1 Tax=Rhodovulum sp. PH10 RepID=J9A1L2_9RHOB rbh
Sensor histidine kinase {ECO:0000313|EMBL:EJW09635.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
multi-sensor hybrid histidine kinase rbh
SCNpilot_cont_500_bf_scaffold_351_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4058..5167
DNA (1110bp) protein (370aa)
Membrane protein AbrB duplication n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEA8_9BRAD
Membrane protein {ECO:0000313|EMBL:ETR77129.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein; K07120
SCNpilot_cont_500_bf_scaffold_351_3
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5191..6423)
DNA (1233bp) protein (411aa)
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
hemA; 5-aminolevulinate synthase (EC:2.3.1.37); K00643 5-aminolevulinate synthase [EC:2.3.1.37] rbh
5-aminolevulinate synthase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SQE3_9BRAD rbh
SCNpilot_cont_500_bf_scaffold_351_4
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(6545..7132)
DNA (588bp) protein (196aa)
NUDIX hydrolase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003486F56
NUDIX hydrolase
Tax=RBG_16_Chloroflexi_52_11_curated
SCNpilot_cont_500_bf_scaffold_351_5
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7166..8434)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H5Y7_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKV26048.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
methyltransferase family protein rbh
SCNpilot_cont_500_bf_scaffold_351_6
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8456..9439)
DNA (984bp) protein (328aa)
Nucleoside-diphosphate-sugar epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] rbh
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZG63_AZOL4 rbh
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:CBS90770.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_cont_500_bf_scaffold_351_7
Aphanocapsa montana, Aphanocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9436..10527)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B5444C rbh
Oxidoreductase {ECO:0000313|EMBL:KIF20474.1}; TaxID=1574475 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanocapsa.;" source="Aphanocapsa montana BDHKU210001.;"
oxidoreductase
SCNpilot_cont_500_bf_scaffold_351_8
unknown

Not on your lists

10637..12754
DNA (2118bp) protein (706aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_351_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12836..13243
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037673C9
transmembrane protein
Uncharacterized protein {ECO:0000313|EMBL:EFI51444.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_cont_500_bf_scaffold_351_10
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13331..14647
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EIK6_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ36000.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_500_bf_scaffold_351_11
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14647..15462
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034AFDA1
hypothetical protein; K09701 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ35999.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_500_bf_scaffold_351_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15507..16733
DNA (1227bp) protein (409aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137E4_RHOPS
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:KIZ39034.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_500_bf_scaffold_351_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16888..17616
DNA (729bp) protein (243aa)
Transcriptional regulator, Crp/Fnr family n=2 Tax=Rhodopseudomonas palustris RepID=B3QGX6_RHOPT
Crp/Fnr family transcriptional regulator
Probable transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:CAE26435.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_500_bf_scaffold_351_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17731..19014
DNA (1284bp) protein (428aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B2E211 rbh
hypothetical protein rbh
Monooxygenase FAD-binding {ECO:0000313|EMBL:ACF02604.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_500_bf_scaffold_351_15
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19033..19488)
DNA (456bp) protein (152aa)
Deaminase n=1 Tax=Pseudomonas aeruginosa BL05 RepID=U9JGI0_PSEAI
deaminase
Probable deaminase {ECO:0000313|EMBL:AAG05887.1}; TaxID=208964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG; 12228).;"
SCNpilot_cont_500_bf_scaffold_351_16
bacterium YEK0313, Bacteria

Not on your lists

comp(19536..19805)
DNA (270bp) protein (90aa)
SirA family protein; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
tRNA 5-methylaminomethyl-2-thiouridine synthase TusA n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RDA4_9RHIZ
Sulfurtransferase TusA {ECO:0000313|EMBL:CEJ13957.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_351_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19888..20988)
DNA (1101bp) protein (367aa)
Transglutaminase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2Y0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07212.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
transglutaminase
SCNpilot_cont_500_bf_scaffold_351_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20990..21730)
DNA (741bp) protein (247aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X9_9BRAD
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:EFI52309.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
thioredoxin family protein
SCNpilot_cont_500_bf_scaffold_351_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21976..22575
DNA (600bp) protein (200aa)
fdoG; formate dehydrogenase-O major subunit FdoG (EC:1.2.1.2)
Molybdopterin oxidoreductase Fe4S4 region n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X8_9BRAD
Formate dehydrogenase-O major subunit {ECO:0000313|EMBL:CEG07214.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_500_bf_scaffold_351_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22624..24987
DNA (2364bp) protein (788aa)
alpha subunit formate dehydrogenase (EC:1.2.1.2)
Formate dehydrogenase, alpha subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X7_9BRAD
Formate dehydrogenase-O major subunit {ECO:0000313|EMBL:CEG07215.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_500_bf_scaffold_351_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25003..25941
DNA (939bp) protein (313aa)
Formate dehydrogenase, beta subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X6_9BRAD
Formate dehydrogenase, beta subunit {ECO:0000313|EMBL:EFI52306.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
fdoH; formate dehydrogenase-O iron-sulfur subunit FdoH; K00124 formate dehydrogenase, beta subunit
SCNpilot_cont_500_bf_scaffold_351_22
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25938..26612
DNA (675bp) protein (225aa)
Formate dehydrogenase, gamma subunit n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ID19_XANP2 rbh
formate dehydrogenase subunit gamma; K00127 formate dehydrogenase, gamma subunit rbh
Formate dehydrogenase, gamma subunit {ECO:0000313|EMBL:ABS65912.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_351_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26729..27646
DNA (918bp) protein (306aa)
Protein FdhE homolog n=1 Tax=Afipia felis ATCC 53690 RepID=K8NUU7_AFIFE
Protein FdhE homolog {ECO:0000256|HAMAP-Rule:MF_00611}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
fdhE; formate dehydrogenase accessory protein FdhE; K02380 FdhE protein
SCNpilot_cont_500_bf_scaffold_351_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27657..29066
DNA (1410bp) protein (470aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
selA; L-seryl-tRNA selenium transferase SelA (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X3_9BRAD
SCNpilot_cont_500_bf_scaffold_351_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29066..29860
DNA (795bp) protein (265aa)
Sel1-like repeat protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BMH0_OLICM
Putative beta-lactamase HcpC {ECO:0000313|EMBL:CEG07220.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
Sel1-like repeat-containing protein; K07126
SCNpilot_cont_500_bf_scaffold_351_26
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29857..31956
DNA (2100bp) protein (700aa)
Selenocysteine-specific translation elongation factor n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X1_9BRAD
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:EFI52301.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
selB; selenocysteine-specific translation elongation factor; K03833 selenocysteine-specific elongation factor
SCNpilot_cont_500_bf_scaffold_351_trna_1
unknown

Not on your lists

31825..31916
DNA (92bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_351_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31953..32444
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07221.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_351_28
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32572..32880
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2W9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI52299.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_351_29
bacterium YEK0313, Bacteria

Not on your lists

32877..33650
DNA (774bp) protein (258aa)
Biotin/lipoate A/B protein ligase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJD5_9PROT
Octanoyltransferase LipM {ECO:0000313|EMBL:CEJ13945.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
biotin/lipoate A/B protein ligase
Displaying items 1-30 of 91 in total

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