ggKbase home page

SCNpilot_cont_500_bf_scaffold_5943

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5943_1
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

254..649
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DIX9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEA05122.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5943_2
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

843..1184
DNA (342bp) protein (114aa)
Protamine-2 (Modular protein) n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EW06_9RHIZ
Protamine-2 (Modular protein) {ECO:0000313|EMBL:CCV08138.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5943_3
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1292..1552
DNA (261bp) protein (87aa)
Probable transmembrane protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D0B3_9RHIZ
Putative permease, DMT superfamily {ECO:0000313|EMBL:EDQ34966.2}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
SCNpilot_cont_500_bf_scaffold_5943_4
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1650..2072
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE56_PELHB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ51820.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_500_bf_scaffold_5943_5
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2097..3380)
DNA (1284bp) protein (428aa)
UPI0003CDED6F related cluster n=1 Tax=unknown RepID=UPI0003CDED6F
Uncharacterized protein {ECO:0000313|EMBL:CDX24097.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5943_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3598..4578)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003690B76 rbh
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component {ECO:0000313|EMBL:CDX42611.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5943_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4652..6547)
DNA (1896bp) protein (632aa)
cobalt chelatase large subunit (EC:6.6.1.2); K09883 cobaltochelatase CobT [EC:6.6.1.2]
Cobalt chelatase, pCobT subunit n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HML5_9RHIZ
Cobalt chelatase, pCobT subunit {ECO:0000313|EMBL:EHK58005.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_cont_500_bf_scaffold_5943_8
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6562..6909)
DNA (348bp) protein (116aa)
Glutathione-dependent formaldehyde-activating, GFA n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DT3_MESSB
glutathione-dependent formaldehyde-activating protein
Glutathione-dependent formaldehyde-activating, GFA {ECO:0000313|EMBL:ABG64442.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_5943_9
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6920..7285)
DNA (366bp) protein (122aa)
cobalt chelatase small subunit (EC:6.6.1.2); K09882 cobaltochelatase CobS [EC:6.6.1.2]
UPI0003CEA342 related cluster n=1 Tax=unknown RepID=UPI0003CEA342
Aerobic cobaltochelatase subunit CobS {ECO:0000313|EMBL:ESY75256.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_cont_500_bf_scaffold_5943_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7255..7830)
DNA (576bp) protein (192aa)
Aerobic cobaltochelatase cobS subunit (Cobalamin biosynthesis) {ECO:0000313|EMBL:CDX23901.1}; EC=6.6.1.2 {ECO:0000313|EMBL:CDX23901.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
cobalt chelatase small subunit (EC:6.6.1.2); K09882 cobaltochelatase CobS [EC:6.6.1.2]
Aerobic cobaltochelatase subunit CobS n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FDF2_9RHIZ
SCNpilot_cont_500_bf_scaffold_5943_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7935..8597)
DNA (663bp) protein (221aa)
Molecular chaperone DnaJ n=5 Tax=Mesorhizobium RepID=V7F0L7_9RHIZ
Uncharacterized 19.0 kDa protein in cobS 5'region {ECO:0000313|EMBL:CDX49043.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
heat shock protein DnaJ domain-containing protein
SCNpilot_cont_500_bf_scaffold_5943_12
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8708..9010
DNA (303bp) protein (101aa)
BolA family transcriptional regulator n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FGN0_9RHIZ
Regulator of penicillin binding proteins and beta lactamase transcription (Morphogene) {ECO:0000313|EMBL:CDX23214.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
stress-induced morphogen
SCNpilot_cont_500_bf_scaffold_5943_13
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9018..9749)
DNA (732bp) protein (244aa)
Asp/Glu racemase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003488C96
Asp/Glu/hydantoin racemase {ECO:0000313|EMBL:AIQ93603.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
Asp/Glu/hydantoin racemase
SCNpilot_cont_500_bf_scaffold_5943_14
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9757..10662)
DNA (906bp) protein (302aa)
Polysaccharide deacetylase family protein, putative n=1 Tax=alpha proteobacterium BAL199 RepID=A8TW85_9PROT rbh
Polysaccharide deacetylase family protein, putative {ECO:0000313|EMBL:EDP63279.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
polysaccharide deacetylase rbh
SCNpilot_cont_500_bf_scaffold_5943_15
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10815..11882
DNA (1068bp) protein (356aa)
transcriptional regulator n=1 Tax=Herbaspirillum seropedicae RepID=UPI00037E008E
Transcriptional regulator GntR {ECO:0000313|EMBL:GAN79171.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
transcriptional regulator GntR family
SCNpilot_cont_500_bf_scaffold_5943_16
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11926..13266)
DNA (1341bp) protein (447aa)
Major facilitator superfamily MFS_1 n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WW11_KYRT2 rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADG05643.1}; TaxID=562970 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" source="Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) (Bacillus; tusciae).;"
SCNpilot_cont_500_bf_scaffold_5943_17
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13711..13827
DNA (117bp) protein (39aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LGP6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF16964.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5943_18
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14086..14376)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000307922D
Uncharacterized protein {ECO:0000313|EMBL:CDX20440.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5943_19
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14687..15334
DNA (648bp) protein (216aa)
Negative transcriptional regulator n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BBJ8_PARDP rbh
FMN-binding negative transcriptional regulator; K07734 transcriptional regulator rbh
Negative transcriptional regulator {ECO:0000313|EMBL:ABL72892.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_500_bf_scaffold_5943_20
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15407..16288)
DNA (882bp) protein (294aa)
Mlr4745 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98DD9_RHILO
hypothetical protein
Mlr4745 protein {ECO:0000313|EMBL:BAB51332.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
Displaying 20 items

View Taxonomy