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SCNpilot_cont_500_bf_scaffold_7747

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_7747_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..613)
DNA (612bp) protein (204aa)
ABC transporter transmembrane region (EC:3.6.3.27); K06147 ATP-binding cassette, subfamily B, bacterial
ABC transporter, transmembrane region n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WVD7_9BRAD
ABC transporter, transmembrane region {ECO:0000313|EMBL:EAQ36057.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_500_bf_scaffold_7747_2
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(738..1754)
DNA (1017bp) protein (339aa)
UDP-glucose 4-epimerase (EC:5.1.3.2); K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
UDP-galactose 4-epimerase {ECO:0000313|EMBL:ABA04327.1}; EC=5.1.3.2 {ECO:0000313|EMBL:ABA04327.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
UDP-galactose 4-epimerase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3STR4_NITWN
SCNpilot_cont_500_bf_scaffold_7747_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1970..2917
DNA (948bp) protein (316aa)
Lipopolysaccharide heptosyltransferase I {ECO:0000313|EMBL:EGP06622.1}; EC=2.4.1.- {ECO:0000313|EMBL:EGP06622.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
rfaC; lipopolysaccharide heptosyltransferase I (EC:2.4.-.-); K02841 heptosyltransferase I [EC:2.4.-.-]
glycosyl transferase family 1 n=1 Tax=Afipia birgiae RepID=UPI000315424E
SCNpilot_cont_500_bf_scaffold_7747_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2943..3716)
DNA (774bp) protein (258aa)
Anti-sigma factor n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J0U1_RHOP2
anti-sigma factor
Anti-sigma factor {ECO:0000313|EMBL:ABD05919.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_500_bf_scaffold_7747_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3743..4201)
DNA (459bp) protein (153aa)
RNA polymerase sigma factor n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0Z8_9BRAD
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ECF sigma; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_7747_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4470..5210
DNA (741bp) protein (247aa)
enoyl-(acyl carrier protein) reductase; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J0T9_RHOP2
SCNpilot_cont_500_bf_scaffold_7747_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5369..5968
DNA (600bp) protein (200aa)
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PP75_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41295.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_500_bf_scaffold_7747_8
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6052..7137
DNA (1086bp) protein (362aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5]
Chorismate synthase {ECO:0000255|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000255|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000255|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000255|HAMAP-Rule:MF_00300}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Chorismate synthase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=AROC_NITWN
SCNpilot_cont_500_bf_scaffold_7747_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7149..8342
DNA (1194bp) protein (398aa)
guanylate cyclase (EC:4.6.1.1); K01768 adenylate cyclase [EC:4.6.1.1]
adenylate cyclase n=1 Tax=Afipia birgiae RepID=UPI00031AAB10
Uncharacterized protein {ECO:0000313|EMBL:EKS41299.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_500_bf_scaffold_7747_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8406..9599
DNA (1194bp) protein (398aa)
adenylate cyclase; K01768 adenylate cyclase [EC:4.6.1.1]
Blr2632 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89RY0_BRADU
Adenylate cyclase {ECO:0000313|EMBL:KIZ33757.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_500_bf_scaffold_7747_11
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9701..9898)
DNA (198bp) protein (66aa)
ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IJE2_9BRAD
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
clpS; ATP-dependent Clp protease adaptor; K06891 ATP-dependent Clp protease adaptor protein ClpS
SCNpilot_cont_500_bf_scaffold_7747_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10099..11145)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PSI2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41303.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
Displaying 12 items

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