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SCNpilot_cont_500_bf_scaffold_2029

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2029_1
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..984)
DNA (984bp) protein (328aa)
Acyltransferase 3 n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SZ39_9BRAD
Exopolysaccharide production protein ExoZ {ECO:0000313|EMBL:KIV66431.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
exoZ; exopolysaccharide production protein
SCNpilot_cont_500_bf_scaffold_2029_2
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1185..1880
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI000381F3F1
Cytochrome B561 {ECO:0000313|EMBL:KAK45009.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
cytochrome B561
SCNpilot_cont_500_bf_scaffold_2029_trna_2
unknown

Not on your lists

comp(3001..3072)
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_2029_3
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3194..3472
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FGQ6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX74215.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2029_trna_1
unknown

Not on your lists

comp(3549..3619)
DNA (71bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_2029_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3784..4617)
DNA (834bp) protein (278aa)
Aminotransferase class-III n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4T2_POLGS
Class III aminotransferase {ECO:0000313|EMBL:KGM31415.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
class III aminotransferase
SCNpilot_cont_500_bf_scaffold_2029_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4741..5520)
DNA (780bp) protein (260aa)
ABC transporter related protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXW8_FERPA
Uncharacterized protein {ECO:0000313|EMBL:KGM31417.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_2029_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5529..6269)
DNA (741bp) protein (247aa)
amino acid ABC transporter ATP-binding protein n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626AD1
Uncharacterized protein {ECO:0000313|EMBL:KGM30008.1}; Flags: Fragment;; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_2029_7
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6259..7242)
DNA (984bp) protein (328aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM35688.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Inner-membrane translocator id=1879040 bin=GWD2_Chloroflexi_49_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
inner-membrane translocator
SCNpilot_cont_500_bf_scaffold_2029_8
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7253..8152)
DNA (900bp) protein (300aa)
Putative branched-chain amino acid transport permease n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FY62_9RHIZ
Branched-chain amino acid transport permease {ECO:0000313|EMBL:KGM35687.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
inner-membrane translocator
SCNpilot_cont_500_bf_scaffold_2029_9
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8227..9402)
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI0002FD9AD6
Uncharacterized protein {ECO:0000313|EMBL:KGM35686.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_2029_10
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9511..10374
DNA (864bp) protein (288aa)
Transcriptional regulator, RpiR family n=3 Tax=Rhizobium meliloti RepID=F6C1T9_SINMB
Uncharacterized protein {ECO:0000313|EMBL:KGM35685.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
RpiR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2029_11
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10385..11704
DNA (1320bp) protein (440aa)
Class-III pyridoxal-phosphate-dependent aminotransferase (EC:2.6.-.-)
Class-III pyridoxal-phosphate-dependent aminotransferase n=2 Tax=Rhizobium meliloti RepID=M4MIX5_RHIML
Uncharacterized protein {ECO:0000313|EMBL:KGM35684.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_500_bf_scaffold_2029_12
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11765..12901)
DNA (1137bp) protein (379aa)
Mandelate racemase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QTN1_9BURK
Mandelate racemase {ECO:0000313|EMBL:ETF02670.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
putative mandelate racemase/muconate-lactonizing protein
SCNpilot_cont_500_bf_scaffold_2029_13
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12905..14488)
DNA (1584bp) protein (528aa)
Choline dehydrogenase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QRR9_9BURK
Choline dehydrogenase {ECO:0000313|EMBL:ETF02671.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
GMC oxidoreductase
SCNpilot_cont_500_bf_scaffold_2029_14
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14520..15512)
DNA (993bp) protein (331aa)
ABC transporter substrate-binding protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QSR4_9BURK
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETF02672.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2029_15
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15540..16358)
DNA (819bp) protein (273aa)
ATP-binding protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QTK6_9BURK rbh
ATP-binding protein {ECO:0000313|EMBL:ETF02673.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
ABC transporter
SCNpilot_cont_500_bf_scaffold_2029_16
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16355..17134)
DNA (780bp) protein (260aa)
ABC transporter permease n=1 Tax=Advenella kashmirensis W13003 RepID=V8QUJ0_9BURK
ABC transporter permease {ECO:0000313|EMBL:ETF02674.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_500_bf_scaffold_2029_17
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17103..17957)
DNA (855bp) protein (285aa)
GntR family transcriptional regulator n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3U7C6_ADVKW
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:AFK60914.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCNpilot_cont_500_bf_scaffold_2029_18
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18040..18834)
DNA (795bp) protein (265aa)
Uncharacterized protein n=3 Tax=Ochrobactrum intermedium RepID=M5JPA8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EEQ94546.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2029_19
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19131..19742)
DNA (612bp) protein (204aa)
Ribose 1,5-bisphosphate phosphokinase PhnN {ECO:0000256|HAMAP-Rule:MF_00836}; EC=2.7.4.23 {ECO:0000256|HAMAP-Rule:MF_00836};; Ribose 1,5-bisphosphokinase {ECO:0000256|HAMAP-Rule:MF_00836}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; K05774 ribose 1,5-bisphosphokinase [EC:2.7.4.23]
Ribose 1,5-bisphosphate phosphokinase PhnN n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QJB9_9RHIZ
SCNpilot_cont_500_bf_scaffold_2029_20
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19735..20064)
DNA (330bp) protein (110aa)
phosphonate metabolism protein PhnM n=1 Tax=Rhizobium giardinii RepID=UPI00037AEAAF
phosphonate metabolism protein PhnM; K06162 PhnM protein
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:ABR63460.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_500_bf_scaffold_2029_21
unknown

Not on your lists

20075..20785
DNA (711bp) protein (237aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2029_22
Brucella pinnipedialis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20790..21494)
DNA (705bp) protein (235aa)
Uncharacterized protein n=6 Tax=Brucella RepID=N7QGG5_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEZ31002.1}; TaxID=520462 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella pinnipedialis M292/94/1.;"
SCNpilot_cont_500_bf_scaffold_2029_23
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21494..22312)
DNA (819bp) protein (273aa)
Phosphonate ABC transporter, permease protein PhnE n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSU6_9RHIZ
Phosphonate ABC transporter permease {ECO:0000313|EMBL:KJF65364.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
phosphonate ABC transporter permease; K02042 phosphonate transport system permease protein
SCNpilot_cont_500_bf_scaffold_2029_24
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22377..23366)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C34FC rbh
Phosphonate ABC transporter, periplasmic phosphonate binding protein {ECO:0000313|EMBL:EIM27037.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
phosphonate ABC transporter substrate-binding protein
SCNpilot_cont_500_bf_scaffold_2029_25
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23392..24180)
DNA (789bp) protein (263aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
phnC; phosphonate ABC transporter ATP-binding protein (EC:3.6.3.28); K02041 phosphonate transport system ATP-binding protein [EC:3.6.3.28]
Phosphonate ABC transporter, ATP-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSU4_9RHIZ
SCNpilot_cont_500_bf_scaffold_2029_26
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24281..24979)
DNA (699bp) protein (233aa)
UPI0003CFDEC3 related cluster n=1 Tax=unknown RepID=UPI0003CFDEC3
Phosphonate metabolim protein, transferase hexapeptide repeat family {ECO:0000313|EMBL:CDX32942.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
phosphonate metabolim protein, transferase hexapeptide repeat family
SCNpilot_cont_500_bf_scaffold_2029_27
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24981..25688)
DNA (708bp) protein (236aa)
Phosphonate C-P lyase system protein PhnL n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X103_OCHA4
phosphonate C-P lyase system protein PhnL; K05780 putative phosphonate transport system ATP-binding protein
Phosphonate C-P lyase system protein PhnL {ECO:0000313|EMBL:ABS14907.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_500_bf_scaffold_2029_28
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25698..26516)
DNA (819bp) protein (273aa)
Phosphonate C-P lyase system protein PhnK n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MD84_9RHIZ
Phosphonate C-P lyase system protein PhnK {ECO:0000313|EMBL:EKF20126.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
phnK; phosphonate C-P lyase system protein PhnK; K05781 putative phosphonate transport system ATP-binding protein
Displaying items 1-30 of 51 in total

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