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SCNpilot_cont_500_bf_scaffold_2381

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2381_1
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..243)
DNA (243bp) protein (81aa)
hypothetical protein; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
UPI0003CDFF87 related cluster n=1 Tax=unknown RepID=UPI0003CDFF87
SAM-dependent methlyltransferase {ECO:0000313|EMBL:ESW89885.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_cont_500_bf_scaffold_2381_2
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

374..1060
DNA (687bp) protein (229aa)
DNA-binding protein n=1 Tax=Kaistia granuli RepID=UPI00036DCDAC
DNA-binding protein {ECO:0000313|EMBL:KJR65996.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
putative transcriptional regulator (winged helix domain)
SCNpilot_cont_500_bf_scaffold_2381_3
Yersinia frederiksenii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1128..1505
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T5A7_YERIN
Phenazine antibiotic resistance protein {ECO:0000256|PIRNR:PIRNR039020}; TaxID=349966 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia frederiksenii ATCC 33641.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_cont_500_bf_scaffold_2381_4
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1502..1975
DNA (474bp) protein (158aa)
UPI0003D01867 related cluster n=1 Tax=unknown RepID=UPI0003D01867
UPF0310 protein X734_22365 {ECO:0000256|HAMAP-Rule:MF_00771}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
Protein of unknown function DUF55
SCNpilot_cont_500_bf_scaffold_2381_5
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1872..2417)
DNA (546bp) protein (182aa)
UPI0003CE52F6 related cluster n=1 Tax=unknown RepID=UPI0003CE52F6
Uncharacterized protein {ECO:0000313|EMBL:ESW89886.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2381_6
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2515..2856)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EMG7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX33590.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2381_7
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3013..3294)
DNA (282bp) protein (94aa)
Integration host factor subunit beta n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C116_9RHIZ
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
integration host factor subunit beta; K05788 integration host factor subunit beta
SCNpilot_cont_500_bf_scaffold_2381_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3376..4239)
DNA (864bp) protein (288aa)
signal peptide peptidase SppA; K04773 protease IV [EC:3.4.21.-]
Proteinase IV protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V5J1_9RHIZ
Proteinase IV protein {ECO:0000313|EMBL:ENN86322.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_500_bf_scaffold_2381_9
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4443..5222
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DBC08F
Putative uncharacterized protein {ECO:0000313|EMBL:EHK59281.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
SCNpilot_cont_500_bf_scaffold_2381_10
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5197..5877
DNA (681bp) protein (227aa)
UPI0003D06D3E related cluster n=1 Tax=unknown RepID=UPI0003D06D3E
Uncharacterized protein {ECO:0000313|EMBL:ESZ22220.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
OstA family protein; K09774 lipopolysaccharide export system protein LptA
SCNpilot_cont_500_bf_scaffold_2381_11
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5879..6679
DNA (801bp) protein (267aa)
ABC transporter; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y4U4_9RHIZ
ABC transporter {ECO:0000313|EMBL:EHH13179.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_cont_500_bf_scaffold_2381_12
unknown

Not on your lists

comp(6817..7905)
DNA (1089bp) protein (363aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2381_13
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7913..8227
DNA (315bp) protein (105aa)
ABC-type branched-chain amino acid transport systems n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W5P1_MAGSA
ABC-type branched-chain amino acid transport systems; K01999 branched-chain amino acid transport system substrate-binding protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_cont_500_bf_scaffold_2381_14
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8294..9166
DNA (873bp) protein (291aa)
Branched-chain amino acid transport system permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P083_AZOS1 rbh
livH; branched-chain amino acid transport system permease protein; K01997 branched-chain amino acid transport system permease protein rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_cont_500_bf_scaffold_2381_15
unknown

Not on your lists

comp(9384..9479)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2381_16
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9629..10099
DNA (471bp) protein (157aa)
Branched-chain amino acid transport system permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P084_AZOS1
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:EWY39758.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
livM; branched-chain amino acid transport system permease protein; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_2381_17
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10096..10836
DNA (741bp) protein (247aa)
ABC-type branched-chain amino acid transport systems, ATPase component n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W4G3_MAGSA
ABC-type branched-chain amino acid transport systems, ATPase component; K01995 branched-chain amino acid transport system ATP-binding protein
ABC-type branched-chain amino acid transport systems, ATPase component {ECO:0000313|EMBL:BAE51262.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_cont_500_bf_scaffold_2381_18
bacterium YEK0313, Bacteria

Not on your lists

10836..11540
DNA (705bp) protein (235aa)
Branched-chain amino acid transport ATP-binding protein LivF n=1 Tax=Rhodovulum sp. PH10 RepID=J6UAW7_9RHOB
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CEJ10329.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative branched-chain amino acid ABC transporter, ATP-binding component (livF-like); K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_2381_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11552..14701)
DNA (3150bp) protein (1050aa)
RND multidrug efflux transporter n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XW94_RHIRD
RND multidrug efflux transporter {ECO:0000313|EMBL:EHH05379.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
Putative component of multidrug efflux pump, acrB/acrD/acrF family
SCNpilot_cont_500_bf_scaffold_2381_20
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14709..15896)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003136A95 rbh
RND transporter {ECO:0000313|EMBL:KAJ32296.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Putative component of multidrug efflux pump, acrB/acrD/acrF family
SCNpilot_cont_500_bf_scaffold_2381_21
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16049..16990)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FA4CAA
Inosine-uridine nucleoside N-ribohydrolase
Inosine-uridine nucleoside N-ribohydrolase {ECO:0000313|EMBL:AGB44265.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_cont_500_bf_scaffold_2381_22
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17108..17533
DNA (426bp) protein (142aa)
UPI0003CF599A related cluster n=1 Tax=unknown RepID=UPI0003CF599A
Heat shock protein Hsp20 {ECO:0000313|EMBL:ESY77798.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
heat shock protein Hsp20
SCNpilot_cont_500_bf_scaffold_2381_23
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17596..17853
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C107_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM75509.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2381_24
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17930..18394)
DNA (465bp) protein (155aa)
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
nitrogen regulatory protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000379493B
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:EKF44404.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_cont_500_bf_scaffold_2381_25
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18469..19053)
DNA (585bp) protein (195aa)
Sigma-54 modulation protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C110_9RHIZ
Sigma-54 modulation protein {ECO:0000313|EMBL:EIM75512.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
sigma-54 modulation protein
SCNpilot_cont_500_bf_scaffold_2381_26
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19413..20912)
DNA (1500bp) protein (500aa)
UPI0003D06596 related cluster n=1 Tax=unknown RepID=UPI0003D06596
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
RNA polymerase sigma-54 factor RpoN; K03092 RNA polymerase sigma-54 factor
SCNpilot_cont_500_bf_scaffold_2381_27
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21085..21609)
DNA (525bp) protein (175aa)
HAD family hydrolase n=3 Tax=Ochrobactrum RepID=C4WLS6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG68649.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
HAD family hydrolase
SCNpilot_cont_500_bf_scaffold_2381_28
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21626..22465)
DNA (840bp) protein (280aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQ49_9RHIZ
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KFG68651.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
binding-protein-dependent transport systems inner membrane component rbh
SCNpilot_cont_500_bf_scaffold_2381_29
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22462..23289)
DNA (828bp) protein (276aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X5A6_OCHA4 rbh
binding-protein-dependent transport systems inner membrane component rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABS16410.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_500_bf_scaffold_2381_30
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23346..23531)
DNA (186bp) protein (62aa)
extracellular solute-binding protein n=1 Tax=Ochrobactrum anthropi RepID=UPI00028830F7
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EXL04502.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
extracellular solute-binding protein
Displaying 30 items

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